miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23378 3' -57.8 NC_005259.1 + 68399 0.68 0.503279
Target:  5'- uGCUCu-GGaCCACcaacguaGACCUUGACGCCu -3'
miRNA:   3'- uCGAGcuCC-GGUGa------CUGGGACUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 64027 0.68 0.503279
Target:  5'- aGGCgcggCGAGGCCGgUGACCg-GAUcuuucucuuGCCg -3'
miRNA:   3'- -UCGa---GCUCCGGUgACUGGgaCUG---------UGG- -5'
23378 3' -57.8 NC_005259.1 + 63651 0.7 0.425826
Target:  5'- uGCUCGcuGGCCGg-GACgCCgGACACCu -3'
miRNA:   3'- uCGAGCu-CCGGUgaCUG-GGaCUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 63230 0.67 0.575671
Target:  5'- cAGaUCGGGGUCGCUggucaGACCC-GACGCg -3'
miRNA:   3'- -UCgAGCUCCGGUGA-----CUGGGaCUGUGg -5'
23378 3' -57.8 NC_005259.1 + 60421 0.66 0.628808
Target:  5'- uGCUCGGGGguggcCCACggggcGGCCaCgcccGACACCu -3'
miRNA:   3'- uCGAGCUCC-----GGUGa----CUGG-Ga---CUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 60354 0.67 0.586242
Target:  5'- cAGgUCGAGGCC-CUG-CCCgaaauccCGCCa -3'
miRNA:   3'- -UCgAGCUCCGGuGACuGGGacu----GUGG- -5'
23378 3' -57.8 NC_005259.1 + 57969 0.67 0.565143
Target:  5'- uGgUCGAGGUCGCcggGAUCgUGACcCCg -3'
miRNA:   3'- uCgAGCUCCGGUGa--CUGGgACUGuGG- -5'
23378 3' -57.8 NC_005259.1 + 57462 0.66 0.607485
Target:  5'- cGCUgCGgcAGGCCGgUGGCaCCgGACACg -3'
miRNA:   3'- uCGA-GC--UCCGGUgACUG-GGaCUGUGg -5'
23378 3' -57.8 NC_005259.1 + 56262 0.69 0.473452
Target:  5'- cGGcCUUGAGcGCCGCcgcccGGCCCguaucGGCACCa -3'
miRNA:   3'- -UC-GAGCUC-CGGUGa----CUGGGa----CUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 55905 0.68 0.493242
Target:  5'- cGC-CGGGGUCGCUGGCCa-GACcGCUg -3'
miRNA:   3'- uCGaGCUCCGGUGACUGGgaCUG-UGG- -5'
23378 3' -57.8 NC_005259.1 + 55503 0.66 0.618141
Target:  5'- cAGCgucaCGAGGCCcacagcgaACUGugCCcacaGCGCCg -3'
miRNA:   3'- -UCGa---GCUCCGG--------UGACugGGac--UGUGG- -5'
23378 3' -57.8 NC_005259.1 + 50447 0.66 0.628808
Target:  5'- gGGCUCGGGGUCGCcgGucuCgCUGAuCACg -3'
miRNA:   3'- -UCGAGCUCCGGUGa-Cu--GgGACU-GUGg -5'
23378 3' -57.8 NC_005259.1 + 49365 0.68 0.493242
Target:  5'- cGCgaugaaGAGGCCGgUGAgaucguUCUUGACGCCg -3'
miRNA:   3'- uCGag----CUCCGGUgACU------GGGACUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 48905 0.66 0.650141
Target:  5'- gAGCUcaaCGAG-CUGCUGGgCCUGACcgacGCCa -3'
miRNA:   3'- -UCGA---GCUCcGGUGACUgGGACUG----UGG- -5'
23378 3' -57.8 NC_005259.1 + 47641 0.66 0.618141
Target:  5'- gGGCagCGAGGCCcucuuugaacguGCUGuugaugGCCUUGGcCACCu -3'
miRNA:   3'- -UCGa-GCUCCGG------------UGAC------UGGGACU-GUGG- -5'
23378 3' -57.8 NC_005259.1 + 45481 0.69 0.463708
Target:  5'- gAGCUUcuGGCCGCUGgugGCCUUGGuCGCUg -3'
miRNA:   3'- -UCGAGcuCCGGUGAC---UGGGACU-GUGG- -5'
23378 3' -57.8 NC_005259.1 + 45315 0.69 0.454069
Target:  5'- cGC-CGAGGCCGCcgccgaacugcgUGGCCU--GCGCCg -3'
miRNA:   3'- uCGaGCUCCGGUG------------ACUGGGacUGUGG- -5'
23378 3' -57.8 NC_005259.1 + 45156 0.73 0.267002
Target:  5'- cGCUC-AGGCCGCccuUGGCCUUGuugcGCGCCg -3'
miRNA:   3'- uCGAGcUCCGGUG---ACUGGGAC----UGUGG- -5'
23378 3' -57.8 NC_005259.1 + 45013 0.67 0.565143
Target:  5'- cGC-CGGGGCCGCgccGCCCUGcuucaugaGCugCu -3'
miRNA:   3'- uCGaGCUCCGGUGac-UGGGAC--------UGugG- -5'
23378 3' -57.8 NC_005259.1 + 39501 0.71 0.339747
Target:  5'- gAGCUUGAuGGCCGC--GCCgCUGGcCACCa -3'
miRNA:   3'- -UCGAGCU-CCGGUGacUGG-GACU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.