miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 58386 0.67 0.575675
Target:  5'- gCUcCGACG-GUGCGcACCagCCACCG-GCg -3'
miRNA:   3'- -GAuGCUGCuCACGC-UGG--GGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 37754 0.67 0.565307
Target:  5'- -gAUGACcAGcgcgGUGGCCCCugCGgGCa -3'
miRNA:   3'- gaUGCUGcUCa---CGCUGGGGugGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 4482 0.67 0.575675
Target:  5'- --uCGGCGGuGgaccaugGUGAUCgCCACCGCGCc -3'
miRNA:   3'- gauGCUGCU-Ca------CGCUGG-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 22096 0.67 0.592349
Target:  5'- -gAUGGCGGGcaccauuuucgagGuCGACCCCucgaucCCGCGCa -3'
miRNA:   3'- gaUGCUGCUCa------------C-GCUGGGGu-----GGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 8843 0.67 0.596531
Target:  5'- gCUGCGcCGAccaccacaGCGugCCCGCCGCcuGCc -3'
miRNA:   3'- -GAUGCuGCUca------CGCugGGGUGGCG--CG- -5'
23383 5' -58.1 NC_005259.1 + 63981 0.67 0.605956
Target:  5'- cCUugGauuugauuuccucGCGcGUGaCGGCauaCCACCGCGCc -3'
miRNA:   3'- -GAugC-------------UGCuCAC-GCUGg--GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 24255 0.67 0.575675
Target:  5'- --uCGGCGAGUGCGugCa---CGCGUg -3'
miRNA:   3'- gauGCUGCUCACGCugGggugGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 34693 0.67 0.575675
Target:  5'- gCUGCgGAUGA-UGcCGACCauCUGCCGCGCg -3'
miRNA:   3'- -GAUG-CUGCUcAC-GCUGG--GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 66001 0.68 0.544725
Target:  5'- gCU-CGACGuGGUGCGcACCCUcgggGCCGCa- -3'
miRNA:   3'- -GAuGCUGC-UCACGC-UGGGG----UGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 64766 0.68 0.513332
Target:  5'- -cGCGACG-GUGCGccucggcGgCCCGCUGCGa -3'
miRNA:   3'- gaUGCUGCuCACGC-------UgGGGUGGCGCg -5'
23383 5' -58.1 NC_005259.1 + 9900 0.68 0.524392
Target:  5'- -cGCGACGAGcuuuCGGCCCU--CGCGCu -3'
miRNA:   3'- gaUGCUGCUCac--GCUGGGGugGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 5557 0.68 0.534524
Target:  5'- -cGCGugGGGUGgugacggcgaGACCgUGCCGUGCu -3'
miRNA:   3'- gaUGCugCUCACg---------CUGGgGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 64614 0.68 0.534524
Target:  5'- -gACGGCGAGcGCGACgggcagcagcgCCCACCaaucgaGCGUc -3'
miRNA:   3'- gaUGCUGCUCaCGCUG-----------GGGUGG------CGCG- -5'
23383 5' -58.1 NC_005259.1 + 5646 0.68 0.554988
Target:  5'- --cCGGCGAGgacgGCGGgCgCUACaCGCGCg -3'
miRNA:   3'- gauGCUGCUCa---CGCUgG-GGUG-GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 13462 0.68 0.554988
Target:  5'- -cGCGGCGc-UG-GugCUCACCGCGCu -3'
miRNA:   3'- gaUGCUGCucACgCugGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 49648 0.68 0.554988
Target:  5'- --uCGGCGAugGCGGCCUCGauaCGCGCc -3'
miRNA:   3'- gauGCUGCUcaCGCUGGGGUg--GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 41114 0.68 0.554988
Target:  5'- gUAUGACGAuGUcgGCgGugCCCGCguCGCGCa -3'
miRNA:   3'- gAUGCUGCU-CA--CG-CugGGGUG--GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 3100 0.68 0.554988
Target:  5'- -aGCGAUGAGcggGCGGCCaUugCGCGg -3'
miRNA:   3'- gaUGCUGCUCa--CGCUGGgGugGCGCg -5'
23383 5' -58.1 NC_005259.1 + 46149 0.68 0.554988
Target:  5'- -aGCGACGAGcaUGuCGAauaccgcuugCCCGCCGgGCg -3'
miRNA:   3'- gaUGCUGCUC--AC-GCUg---------GGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 9277 0.68 0.554988
Target:  5'- -aACGGCGAGUuauGCGGUgCCGCCaCGCu -3'
miRNA:   3'- gaUGCUGCUCA---CGCUGgGGUGGcGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.