miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 35620 0.7 0.409918
Target:  5'- gCUGCGuCGAGUaGUucgGGCCgCCGCCGCuGCc -3'
miRNA:   3'- -GAUGCuGCUCA-CG---CUGG-GGUGGCG-CG- -5'
23383 5' -58.1 NC_005259.1 + 28143 0.7 0.437121
Target:  5'- -gGCGAUGAGcUGCccGGCCUCGaCGCGCu -3'
miRNA:   3'- gaUGCUGCUC-ACG--CUGGGGUgGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 31743 0.7 0.446416
Target:  5'- cCUGCcGCGAGcgcugGUGuCCCCACCGCc- -3'
miRNA:   3'- -GAUGcUGCUCa----CGCuGGGGUGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 45333 0.7 0.446416
Target:  5'- aCUGCGugGccUGCGccGCCugggCCGCCGCGUa -3'
miRNA:   3'- -GAUGCugCucACGC--UGG----GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 13786 0.7 0.446416
Target:  5'- -gGCGACGAgcagugGUGCGACaUCACCG-GCg -3'
miRNA:   3'- gaUGCUGCU------CACGCUGgGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 7182 0.69 0.454876
Target:  5'- --cCGGCGAGUGCccGGCCUgcggacgCACCGgGCu -3'
miRNA:   3'- gauGCUGCUCACG--CUGGG-------GUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 21534 0.69 0.465332
Target:  5'- -aGCGGCGAGgacUGcCGACUCagagACCGCGUa -3'
miRNA:   3'- gaUGCUGCUC---AC-GCUGGGg---UGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 43917 0.69 0.465332
Target:  5'- --uCGAUGGGcaGCGACgaCACCGCGCu -3'
miRNA:   3'- gauGCUGCUCa-CGCUGggGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 53687 0.69 0.469165
Target:  5'- -cGCGAUG-GUGCGACCggUcaacgugaacgugguCACCGCGCc -3'
miRNA:   3'- gaUGCUGCuCACGCUGG--G---------------GUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 22188 0.69 0.48368
Target:  5'- --uCGugGu-UGCGACCuugcagacguuggCCACCGCGCa -3'
miRNA:   3'- gauGCugCucACGCUGG-------------GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 42195 0.69 0.484655
Target:  5'- gCUGCG-CGccGUcGCGAUggaugCCCGCCGCGCc -3'
miRNA:   3'- -GAUGCuGCu-CA-CGCUG-----GGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 27178 0.69 0.484655
Target:  5'- -gGCGAUGAGcaggcUGCGAcgcuggaacuCCCgCACCGCGa -3'
miRNA:   3'- gaUGCUGCUC-----ACGCU----------GGG-GUGGCGCg -5'
23383 5' -58.1 NC_005259.1 + 23738 0.69 0.484655
Target:  5'- -cACGugGGacgGCGACCCCgacGCCcCGCa -3'
miRNA:   3'- gaUGCugCUca-CGCUGGGG---UGGcGCG- -5'
23383 5' -58.1 NC_005259.1 + 747 0.69 0.49446
Target:  5'- cCUACGcCGccGGUGCcuACCgcguCCACCGCGCc -3'
miRNA:   3'- -GAUGCuGC--UCACGc-UGG----GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 17569 0.69 0.49446
Target:  5'- --cCGACGAGauccuccCGACgCUGCCGCGCa -3'
miRNA:   3'- gauGCUGCUCac-----GCUGgGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 26589 0.69 0.49446
Target:  5'- -cGCGAgGGGUuuGCcuuGAUCCaCGCCGCGCc -3'
miRNA:   3'- gaUGCUgCUCA--CG---CUGGG-GUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 64766 0.68 0.513332
Target:  5'- -cGCGACG-GUGCGccucggcGgCCCGCUGCGa -3'
miRNA:   3'- gaUGCUGCuCACGC-------UgGGGUGGCGCg -5'
23383 5' -58.1 NC_005259.1 + 9900 0.68 0.524392
Target:  5'- -cGCGACGAGcuuuCGGCCCU--CGCGCu -3'
miRNA:   3'- gaUGCUGCUCac--GCUGGGGugGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 64614 0.68 0.534524
Target:  5'- -gACGGCGAGcGCGACgggcagcagcgCCCACCaaucgaGCGUc -3'
miRNA:   3'- gaUGCUGCUCaCGCUG-----------GGGUGG------CGCG- -5'
23383 5' -58.1 NC_005259.1 + 21971 0.68 0.534524
Target:  5'- -cGCGugG-GUGuCGuucuCCCCACCG-GCa -3'
miRNA:   3'- gaUGCugCuCAC-GCu---GGGGUGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.