Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 22096 | 0.67 | 0.592349 |
Target: 5'- -gAUGGCGGGcaccauuuucgagGuCGACCCCucgaucCCGCGCa -3' miRNA: 3'- gaUGCUGCUCa------------C-GCUGGGGu-----GGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 2514 | 0.67 | 0.575675 |
Target: 5'- -aGC-ACGAGacccaaGcCGACgCCACCGCGCg -3' miRNA: 3'- gaUGcUGCUCa-----C-GCUGgGGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 24255 | 0.67 | 0.575675 |
Target: 5'- --uCGGCGAGUGCGugCa---CGCGUg -3' miRNA: 3'- gauGCUGCUCACGCugGggugGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 4482 | 0.67 | 0.575675 |
Target: 5'- --uCGGCGGuGgaccaugGUGAUCgCCACCGCGCc -3' miRNA: 3'- gauGCUGCU-Ca------CGCUGG-GGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 17175 | 0.67 | 0.575675 |
Target: 5'- -gACGACaAG-GCGGCgCaggaaGCCGCGCg -3' miRNA: 3'- gaUGCUGcUCaCGCUGgGg----UGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 34693 | 0.67 | 0.575675 |
Target: 5'- gCUGCgGAUGA-UGcCGACCauCUGCCGCGCg -3' miRNA: 3'- -GAUG-CUGCUcAC-GCUGG--GGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 58386 | 0.67 | 0.575675 |
Target: 5'- gCUcCGACG-GUGCGcACCagCCACCG-GCg -3' miRNA: 3'- -GAuGCUGCuCACGC-UGG--GGUGGCgCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 37754 | 0.67 | 0.565307 |
Target: 5'- -gAUGACcAGcgcgGUGGCCCCugCGgGCa -3' miRNA: 3'- gaUGCUGcUCa---CGCUGGGGugGCgCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 3100 | 0.68 | 0.554988 |
Target: 5'- -aGCGAUGAGcggGCGGCCaUugCGCGg -3' miRNA: 3'- gaUGCUGCUCa--CGCUGGgGugGCGCg -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 5646 | 0.68 | 0.554988 |
Target: 5'- --cCGGCGAGgacgGCGGgCgCUACaCGCGCg -3' miRNA: 3'- gauGCUGCUCa---CGCUgG-GGUG-GCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 13462 | 0.68 | 0.554988 |
Target: 5'- -cGCGGCGc-UG-GugCUCACCGCGCu -3' miRNA: 3'- gaUGCUGCucACgCugGGGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 49648 | 0.68 | 0.554988 |
Target: 5'- --uCGGCGAugGCGGCCUCGauaCGCGCc -3' miRNA: 3'- gauGCUGCUcaCGCUGGGGUg--GCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 9277 | 0.68 | 0.554988 |
Target: 5'- -aACGGCGAGUuauGCGGUgCCGCCaCGCu -3' miRNA: 3'- gaUGCUGCUCA---CGCUGgGGUGGcGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 41114 | 0.68 | 0.554988 |
Target: 5'- gUAUGACGAuGUcgGCgGugCCCGCguCGCGCa -3' miRNA: 3'- gAUGCUGCU-CA--CG-CugGGGUG--GCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 46149 | 0.68 | 0.554988 |
Target: 5'- -aGCGACGAGcaUGuCGAauaccgcuugCCCGCCGgGCg -3' miRNA: 3'- gaUGCUGCUC--AC-GCUg---------GGGUGGCgCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 66001 | 0.68 | 0.544725 |
Target: 5'- gCU-CGACGuGGUGCGcACCCUcgggGCCGCa- -3' miRNA: 3'- -GAuGCUGC-UCACGC-UGGGG----UGGCGcg -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 5003 | 0.68 | 0.543702 |
Target: 5'- aCUACGGCaaGGUGgucgagaucgaucCGGCCCCACacgacaGCGCc -3' miRNA: 3'- -GAUGCUGc-UCAC-------------GCUGGGGUGg-----CGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 5557 | 0.68 | 0.534524 |
Target: 5'- -cGCGugGGGUGgugacggcgaGACCgUGCCGUGCu -3' miRNA: 3'- gaUGCugCUCACg---------CUGGgGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 64614 | 0.68 | 0.534524 |
Target: 5'- -gACGGCGAGcGCGACgggcagcagcgCCCACCaaucgaGCGUc -3' miRNA: 3'- gaUGCUGCUCaCGCUG-----------GGGUGG------CGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 21971 | 0.68 | 0.534524 |
Target: 5'- -cGCGugG-GUGuCGuucuCCCCACCG-GCa -3' miRNA: 3'- gaUGCugCuCAC-GCu---GGGGUGGCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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