miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23384 3' -57.7 NC_005259.1 + 50446 0.79 0.110784
Target:  5'- cGgGCUCGGGGUCGCCGGUCUCGcugaucACGUu -3'
miRNA:   3'- -CgCGAGUUCCGGCGGCUAGGGU------UGCA- -5'
23384 3' -57.7 NC_005259.1 + 22795 0.77 0.157263
Target:  5'- gGUGCUCAccgAGGgUGCCGAuuUCCCGAUGUg -3'
miRNA:   3'- -CGCGAGU---UCCgGCGGCU--AGGGUUGCA- -5'
23384 3' -57.7 NC_005259.1 + 50206 0.74 0.23812
Target:  5'- cCGCUCAAGcGCCGCCucgucaaucucGAUCCgAGCGc -3'
miRNA:   3'- cGCGAGUUC-CGGCGG-----------CUAGGgUUGCa -5'
23384 3' -57.7 NC_005259.1 + 55812 0.74 0.244186
Target:  5'- -gGCUCAcccucgggguAGGCCGCCGcGUCCuCGACGc -3'
miRNA:   3'- cgCGAGU----------UCCGGCGGC-UAGG-GUUGCa -5'
23384 3' -57.7 NC_005259.1 + 51502 0.74 0.250379
Target:  5'- -aGgUCGAcGCCGCCGAUCUCGACGc -3'
miRNA:   3'- cgCgAGUUcCGGCGGCUAGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 21805 0.73 0.269736
Target:  5'- cCGCUCAAGGUCaGCCGGUCaccacaCCAACa- -3'
miRNA:   3'- cGCGAGUUCCGG-CGGCUAG------GGUUGca -5'
23384 3' -57.7 NC_005259.1 + 21047 0.72 0.304647
Target:  5'- cGCGUUCAAGGUCGCCGccAUCgUGugGa -3'
miRNA:   3'- -CGCGAGUUCCGGCGGC--UAGgGUugCa -5'
23384 3' -57.7 NC_005259.1 + 44908 0.71 0.342924
Target:  5'- cGCGCUguGGGCCGCCgcauacgcgcuGAUCggguccauggcaCCAGCGg -3'
miRNA:   3'- -CGCGAguUCCGGCGG-----------CUAG------------GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 11447 0.71 0.359176
Target:  5'- cCGCUCGcuGCCGCCGGUgCCUAuCGUc -3'
miRNA:   3'- cGCGAGUucCGGCGGCUA-GGGUuGCA- -5'
23384 3' -57.7 NC_005259.1 + 25183 0.71 0.367502
Target:  5'- cCGUaCGccGCCGCCGAUCCCAcCGg -3'
miRNA:   3'- cGCGaGUucCGGCGGCUAGGGUuGCa -5'
23384 3' -57.7 NC_005259.1 + 16812 0.71 0.367502
Target:  5'- cGCGCUCGGGGCCGgggucaUGAUCCgacacaaGGCGg -3'
miRNA:   3'- -CGCGAGUUCCGGCg-----GCUAGGg------UUGCa -5'
23384 3' -57.7 NC_005259.1 + 14970 0.7 0.402109
Target:  5'- gGCGCauUCAAGGCCGCCGGguacaagaCaCAGCa- -3'
miRNA:   3'- -CGCG--AGUUCCGGCGGCUag------G-GUUGca -5'
23384 3' -57.7 NC_005259.1 + 28750 0.7 0.411079
Target:  5'- cGCGCcCGAGcgugagaucGUCGCCGGUgCCGACGa -3'
miRNA:   3'- -CGCGaGUUC---------CGGCGGCUAgGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 54751 0.7 0.420171
Target:  5'- aGCGaUC-AGGCCGCCGA-CCCAAa-- -3'
miRNA:   3'- -CGCgAGuUCCGGCGGCUaGGGUUgca -5'
23384 3' -57.7 NC_005259.1 + 35276 0.7 0.429384
Target:  5'- cGCGC-CGGGGUCGCCGAUgugCCCcuUGa -3'
miRNA:   3'- -CGCGaGUUCCGGCGGCUA---GGGuuGCa -5'
23384 3' -57.7 NC_005259.1 + 19863 0.7 0.438716
Target:  5'- gGCGCUCGcGcCCGCCGGgaUCgCCGACGc -3'
miRNA:   3'- -CGCGAGUuCcGGCGGCU--AG-GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 874 0.7 0.438716
Target:  5'- uGCGCUCAacgcaAGGaUCGauGAUCCCAACa- -3'
miRNA:   3'- -CGCGAGU-----UCC-GGCggCUAGGGUUGca -5'
23384 3' -57.7 NC_005259.1 + 67891 0.69 0.448162
Target:  5'- cGCGCaUCGuucGGCUGUgGGUCUCGGCGa -3'
miRNA:   3'- -CGCG-AGUu--CCGGCGgCUAGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 66012 0.69 0.457719
Target:  5'- uGCGCacccUCGGGGCCGCacguguugcgcgCGAgCUCGACGUa -3'
miRNA:   3'- -CGCG----AGUUCCGGCG------------GCUaGGGUUGCA- -5'
23384 3' -57.7 NC_005259.1 + 42947 0.69 0.457719
Target:  5'- cGUGggCGAGGCCGCCGuugUCgAACGg -3'
miRNA:   3'- -CGCgaGUUCCGGCGGCua-GGgUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.