miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23384 3' -57.7 NC_005259.1 + 874 0.7 0.438716
Target:  5'- uGCGCUCAacgcaAGGaUCGauGAUCCCAACa- -3'
miRNA:   3'- -CGCGAGU-----UCC-GGCggCUAGGGUUGca -5'
23384 3' -57.7 NC_005259.1 + 7580 0.67 0.558495
Target:  5'- cGCGC-CGccGCCGCCGAcCUCAAgGUc -3'
miRNA:   3'- -CGCGaGUucCGGCGGCUaGGGUUgCA- -5'
23384 3' -57.7 NC_005259.1 + 11447 0.71 0.359176
Target:  5'- cCGCUCGcuGCCGCCGGUgCCUAuCGUc -3'
miRNA:   3'- cGCGAGUucCGGCGGCUA-GGGUuGCA- -5'
23384 3' -57.7 NC_005259.1 + 14339 0.66 0.631543
Target:  5'- cGCGUgc-GGGCCGCCGAcgCCAucaacucACGUg -3'
miRNA:   3'- -CGCGaguUCCGGCGGCUagGGU-------UGCA- -5'
23384 3' -57.7 NC_005259.1 + 14748 0.69 0.457719
Target:  5'- cGCGCUgGccGGGCCGgUGAUCCugcaCAACGc -3'
miRNA:   3'- -CGCGAgU--UCCGGCgGCUAGG----GUUGCa -5'
23384 3' -57.7 NC_005259.1 + 14970 0.7 0.402109
Target:  5'- gGCGCauUCAAGGCCGCCGGguacaagaCaCAGCa- -3'
miRNA:   3'- -CGCG--AGUUCCGGCGGCUag------G-GUUGca -5'
23384 3' -57.7 NC_005259.1 + 16812 0.71 0.367502
Target:  5'- cGCGCUCGGGGCCGgggucaUGAUCCgacacaaGGCGg -3'
miRNA:   3'- -CGCGAGUUCCGGCg-----GCUAGGg------UUGCa -5'
23384 3' -57.7 NC_005259.1 + 17802 0.68 0.537704
Target:  5'- cGCGauagCGAGGCCGgUGAgCUCAGCGa -3'
miRNA:   3'- -CGCga--GUUCCGGCgGCUaGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 19361 0.67 0.557449
Target:  5'- aCGCcgggaUCAAGGCCccGCUGAUcaccggcCCCAACGg -3'
miRNA:   3'- cGCG-----AGUUCCGG--CGGCUA-------GGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 19863 0.7 0.438716
Target:  5'- gGCGCUCGcGcCCGCCGGgaUCgCCGACGc -3'
miRNA:   3'- -CGCGAGUuCcGGCGGCU--AG-GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 20409 0.66 0.664532
Target:  5'- aGgGCaUCGAGGUCuacCCGGUCaCCGACGc -3'
miRNA:   3'- -CgCG-AGUUCCGGc--GGCUAG-GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 20825 0.67 0.558495
Target:  5'- gGCGCacCAAGGCUGaCCGugagUCCGACGc -3'
miRNA:   3'- -CGCGa-GUUCCGGC-GGCua--GGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 21047 0.72 0.304647
Target:  5'- cGCGUUCAAGGUCGCCGccAUCgUGugGa -3'
miRNA:   3'- -CGCGAGUUCCGGCGGC--UAGgGUugCa -5'
23384 3' -57.7 NC_005259.1 + 21805 0.73 0.269736
Target:  5'- cCGCUCAAGGUCaGCCGGUCaccacaCCAACa- -3'
miRNA:   3'- cGCGAGUUCCGG-CGGCUAG------GGUUGca -5'
23384 3' -57.7 NC_005259.1 + 22219 0.66 0.664532
Target:  5'- cGCGCaccgccgCGAGGCUGUCGGUUuccgUCGACGc -3'
miRNA:   3'- -CGCGa------GUUCCGGCGGCUAG----GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 22795 0.77 0.157263
Target:  5'- gGUGCUCAccgAGGgUGCCGAuuUCCCGAUGUg -3'
miRNA:   3'- -CGCGAGU---UCCgGCGGCU--AGGGUUGCA- -5'
23384 3' -57.7 NC_005259.1 + 23346 0.66 0.632608
Target:  5'- cGgGCUCGAGGCUGCCugcGAggCCGcCGa -3'
miRNA:   3'- -CgCGAGUUCCGGCGG---CUagGGUuGCa -5'
23384 3' -57.7 NC_005259.1 + 23732 0.67 0.60068
Target:  5'- gGUGCUCAcguGGGaCGgCGAcCCCGACGc -3'
miRNA:   3'- -CGCGAGU---UCCgGCgGCUaGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 23881 0.66 0.631543
Target:  5'- uGCGCUauccgcugccgccCGA-GCCGCCGcgCCCGcCGUc -3'
miRNA:   3'- -CGCGA-------------GUUcCGGCGGCuaGGGUuGCA- -5'
23384 3' -57.7 NC_005259.1 + 24792 0.66 0.621954
Target:  5'- uGCGCagCAGGGCCaagaCCGAggugcCCCGGCa- -3'
miRNA:   3'- -CGCGa-GUUCCGGc---GGCUa----GGGUUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.