Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23384 | 3' | -57.7 | NC_005259.1 | + | 43955 | 0.66 | 0.671953 |
Target: 5'- gGCGaugggCGGGGCCGCCGccugaccgagggcgGUgCCGAUGg -3' miRNA: 3'- -CGCga---GUUCCGGCGGC--------------UAgGGUUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 28750 | 0.7 | 0.411079 |
Target: 5'- cGCGCcCGAGcgugagaucGUCGCCGGUgCCGACGa -3' miRNA: 3'- -CGCGaGUUC---------CGGCGGCUAgGGUUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 54751 | 0.7 | 0.420171 |
Target: 5'- aGCGaUC-AGGCCGCCGA-CCCAAa-- -3' miRNA: 3'- -CGCgAGuUCCGGCGGCUaGGGUUgca -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 35276 | 0.7 | 0.429384 |
Target: 5'- cGCGC-CGGGGUCGCCGAUgugCCCcuUGa -3' miRNA: 3'- -CGCGaGUUCCGGCGGCUA---GGGuuGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 874 | 0.7 | 0.438716 |
Target: 5'- uGCGCUCAacgcaAGGaUCGauGAUCCCAACa- -3' miRNA: 3'- -CGCGAGU-----UCC-GGCggCUAGGGUUGca -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 19863 | 0.7 | 0.438716 |
Target: 5'- gGCGCUCGcGcCCGCCGGgaUCgCCGACGc -3' miRNA: 3'- -CGCGAGUuCcGGCGGCU--AG-GGUUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 67891 | 0.69 | 0.448162 |
Target: 5'- cGCGCaUCGuucGGCUGUgGGUCUCGGCGa -3' miRNA: 3'- -CGCG-AGUu--CCGGCGgCUAGGGUUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 14748 | 0.69 | 0.457719 |
Target: 5'- cGCGCUgGccGGGCCGgUGAUCCugcaCAACGc -3' miRNA: 3'- -CGCGAgU--UCCGGCgGCUAGG----GUUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 66012 | 0.69 | 0.457719 |
Target: 5'- uGCGCacccUCGGGGCCGCacguguugcgcgCGAgCUCGACGUa -3' miRNA: 3'- -CGCG----AGUUCCGGCG------------GCUaGGGUUGCA- -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 14970 | 0.7 | 0.402109 |
Target: 5'- gGCGCauUCAAGGCCGCCGGguacaagaCaCAGCa- -3' miRNA: 3'- -CGCG--AGUUCCGGCGGCUag------G-GUUGca -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 25183 | 0.71 | 0.367502 |
Target: 5'- cCGUaCGccGCCGCCGAUCCCAcCGg -3' miRNA: 3'- cGCGaGUucCGGCGGCUAGGGUuGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 16812 | 0.71 | 0.367502 |
Target: 5'- cGCGCUCGGGGCCGgggucaUGAUCCgacacaaGGCGg -3' miRNA: 3'- -CGCGAGUUCCGGCg-----GCUAGGg------UUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 22795 | 0.77 | 0.157263 |
Target: 5'- gGUGCUCAccgAGGgUGCCGAuuUCCCGAUGUg -3' miRNA: 3'- -CGCGAGU---UCCgGCGGCU--AGGGUUGCA- -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 50206 | 0.74 | 0.23812 |
Target: 5'- cCGCUCAAGcGCCGCCucgucaaucucGAUCCgAGCGc -3' miRNA: 3'- cGCGAGUUC-CGGCGG-----------CUAGGgUUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 55812 | 0.74 | 0.244186 |
Target: 5'- -gGCUCAcccucgggguAGGCCGCCGcGUCCuCGACGc -3' miRNA: 3'- cgCGAGU----------UCCGGCGGC-UAGG-GUUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 51502 | 0.74 | 0.250379 |
Target: 5'- -aGgUCGAcGCCGCCGAUCUCGACGc -3' miRNA: 3'- cgCgAGUUcCGGCGGCUAGGGUUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 21805 | 0.73 | 0.269736 |
Target: 5'- cCGCUCAAGGUCaGCCGGUCaccacaCCAACa- -3' miRNA: 3'- cGCGAGUUCCGG-CGGCUAG------GGUUGca -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 21047 | 0.72 | 0.304647 |
Target: 5'- cGCGUUCAAGGUCGCCGccAUCgUGugGa -3' miRNA: 3'- -CGCGAGUUCCGGCGGC--UAGgGUugCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 44908 | 0.71 | 0.342924 |
Target: 5'- cGCGCUguGGGCCGCCgcauacgcgcuGAUCggguccauggcaCCAGCGg -3' miRNA: 3'- -CGCGAguUCCGGCGG-----------CUAG------------GGUUGCa -5' |
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23384 | 3' | -57.7 | NC_005259.1 | + | 11447 | 0.71 | 0.359176 |
Target: 5'- cCGCUCGcuGCCGCCGGUgCCUAuCGUc -3' miRNA: 3'- cGCGAGUucCGGCGGCUA-GGGUuGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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