miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23402 5' -58 NC_005259.1 + 14802 0.66 0.644471
Target:  5'- gUUCCaCGCCggGCUGAUGAcCGGUGAGg-- -3'
miRNA:   3'- -AAGG-GCGG--UGGCUGCU-GUCGCUCauc -5'
23402 5' -58 NC_005259.1 + 67206 0.66 0.616676
Target:  5'- cUCgCCGCUgucggcggggucgauGCCGACcACGGCGGuGUAGg -3'
miRNA:   3'- aAG-GGCGG---------------UGGCUGcUGUCGCU-CAUC- -5'
23402 5' -58 NC_005259.1 + 4419 0.66 0.609201
Target:  5'- --gCCGCCACCGcGCGcccgaggucgagccGCccguGCGAGUGGg -3'
miRNA:   3'- aagGGCGGUGGC-UGC--------------UGu---CGCUCAUC- -5'
23402 5' -58 NC_005259.1 + 16013 0.66 0.601735
Target:  5'- aUCCUGCCgGuuGACGAgGGUGGGa-- -3'
miRNA:   3'- aAGGGCGG-UggCUGCUgUCGCUCauc -5'
23402 5' -58 NC_005259.1 + 3121 0.66 0.601735
Target:  5'- -gCgCGgCACCGugGGCAGCGGacggcaccgcccGUGGg -3'
miRNA:   3'- aaGgGCgGUGGCugCUGUCGCU------------CAUC- -5'
23402 5' -58 NC_005259.1 + 35648 0.67 0.568855
Target:  5'- --gCUGCCGCUGGCGAggguggcCAGCGcGGUGGu -3'
miRNA:   3'- aagGGCGGUGGCUGCU-------GUCGC-UCAUC- -5'
23402 5' -58 NC_005259.1 + 28383 0.67 0.559387
Target:  5'- --gCCGaaACCgGACGACAGUGuGUAGg -3'
miRNA:   3'- aagGGCggUGG-CUGCUGUCGCuCAUC- -5'
23402 5' -58 NC_005259.1 + 927 0.67 0.54892
Target:  5'- -aCCUGCUGCUGcGCGACAGCGGa--- -3'
miRNA:   3'- aaGGGCGGUGGC-UGCUGUCGCUcauc -5'
23402 5' -58 NC_005259.1 + 36882 0.67 0.538513
Target:  5'- -gCCCG-CGCCGACGACgccGGUGAGc-- -3'
miRNA:   3'- aaGGGCgGUGGCUGCUG---UCGCUCauc -5'
23402 5' -58 NC_005259.1 + 62728 0.67 0.537477
Target:  5'- aUCUCGCUcgaccggACCGGCGGCAGUacgcGGUGGu -3'
miRNA:   3'- aAGGGCGG-------UGGCUGCUGUCGc---UCAUC- -5'
23402 5' -58 NC_005259.1 + 33315 0.67 0.528176
Target:  5'- aUCCCGCCGUCGGCGGuCAcGCGgaAGUGa -3'
miRNA:   3'- aAGGGCGGUGGCUGCU-GU-CGC--UCAUc -5'
23402 5' -58 NC_005259.1 + 46974 0.67 0.528176
Target:  5'- -gCCaCGCCGCCGAUGAUcgGGcCGAGg-- -3'
miRNA:   3'- aaGG-GCGGUGGCUGCUG--UC-GCUCauc -5'
23402 5' -58 NC_005259.1 + 35882 0.67 0.528176
Target:  5'- --gCCGCCGCCGAgGcagaccACGGCGAGc-- -3'
miRNA:   3'- aagGGCGGUGGCUgC------UGUCGCUCauc -5'
23402 5' -58 NC_005259.1 + 10571 0.68 0.517913
Target:  5'- aUCgCGCCGCCu-CGACGGCGAa--- -3'
miRNA:   3'- aAGgGCGGUGGcuGCUGUCGCUcauc -5'
23402 5' -58 NC_005259.1 + 68537 0.68 0.50773
Target:  5'- -gCCCGCCACgCGuCGACAuCgGGGUGGu -3'
miRNA:   3'- aaGGGCGGUG-GCuGCUGUcG-CUCAUC- -5'
23402 5' -58 NC_005259.1 + 60563 0.68 0.477717
Target:  5'- -gCCCGgUGCCGACGgucaggcggcccACGGCGAGUcGGg -3'
miRNA:   3'- aaGGGCgGUGGCUGC------------UGUCGCUCA-UC- -5'
23402 5' -58 NC_005259.1 + 16564 0.68 0.466932
Target:  5'- aUCCCGCCcaccgggcagaucGCCGAgGACAucgcccGCGAGg-- -3'
miRNA:   3'- aAGGGCGG-------------UGGCUgCUGU------CGCUCauc -5'
23402 5' -58 NC_005259.1 + 55097 0.69 0.448606
Target:  5'- --aUCGCUGCCGAUGGCGGCGAa--- -3'
miRNA:   3'- aagGGCGGUGGCUGCUGUCGCUcauc -5'
23402 5' -58 NC_005259.1 + 23651 0.69 0.448606
Target:  5'- -gCCCGCCGaCGGCGACGGCuGGa-- -3'
miRNA:   3'- aaGGGCGGUgGCUGCUGUCGcUCauc -5'
23402 5' -58 NC_005259.1 + 2232 0.69 0.448606
Target:  5'- -cCUCGCCAuuugUCGGCGACAGCcGGUAc -3'
miRNA:   3'- aaGGGCGGU----GGCUGCUGUCGcUCAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.