miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23406 5' -52.8 NC_005259.1 + 52155 0.79 0.228128
Target:  5'- gAGGCagGCAGCGCcgagGCGcucaUGCAGCAGGACCg -3'
miRNA:   3'- -UCUG--CGUCGCG----CGC----AUGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 16794 0.78 0.294802
Target:  5'- cGACGCGGU-CGCGUACAucgcgcuCGGGGCCg -3'
miRNA:   3'- uCUGCGUCGcGCGCAUGUu------GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 6518 0.75 0.393588
Target:  5'- cGACGCcguGCGCGCG-ACAACc-GGCCu -3'
miRNA:   3'- uCUGCGu--CGCGCGCaUGUUGuuCUGG- -5'
23406 5' -52.8 NC_005259.1 + 17061 0.75 0.402733
Target:  5'- gAGGCGguGCGCGCauuuGUGCGuCAGGccGCCg -3'
miRNA:   3'- -UCUGCguCGCGCG----CAUGUuGUUC--UGG- -5'
23406 5' -52.8 NC_005259.1 + 55298 0.75 0.412012
Target:  5'- gGGACGUuuGGC-CGCGUGCGAC--GACCa -3'
miRNA:   3'- -UCUGCG--UCGcGCGCAUGUUGuuCUGG- -5'
23406 5' -52.8 NC_005259.1 + 24058 0.75 0.421422
Target:  5'- cGGCGCGGUGCucaaucuCGUGCAccGCGAGAUCa -3'
miRNA:   3'- uCUGCGUCGCGc------GCAUGU--UGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 14046 0.75 0.430961
Target:  5'- ---gGCAGCGCauCGUcgGCGACGAGACCa -3'
miRNA:   3'- ucugCGUCGCGc-GCA--UGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 17185 0.74 0.440625
Target:  5'- cGGCGCAGgaagcCGCGCGUGaggcggguaGACGGGACUg -3'
miRNA:   3'- uCUGCGUC-----GCGCGCAUg--------UUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 25492 0.74 0.470333
Target:  5'- aAGGCGCucGCGCGUGaggGCAAaAAGGCCc -3'
miRNA:   3'- -UCUGCGu-CGCGCGCa--UGUUgUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 66357 0.72 0.543248
Target:  5'- aGGACGCAGCgaucuGCGCGUG--GCAcaGCCa -3'
miRNA:   3'- -UCUGCGUCG-----CGCGCAUguUGUucUGG- -5'
23406 5' -52.8 NC_005259.1 + 66912 0.72 0.553993
Target:  5'- uAGAUccgGCAGCGCGCGgu--GCucGACCg -3'
miRNA:   3'- -UCUG---CGUCGCGCGCauguUGuuCUGG- -5'
23406 5' -52.8 NC_005259.1 + 5551 0.72 0.553993
Target:  5'- cGAgGCcGCGUGgGguggugACGGCGAGACCg -3'
miRNA:   3'- uCUgCGuCGCGCgCa-----UGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 67967 0.72 0.564801
Target:  5'- --cUGUAGCGCGCGcaGCGGCGuGGCCa -3'
miRNA:   3'- ucuGCGUCGCGCGCa-UGUUGUuCUGG- -5'
23406 5' -52.8 NC_005259.1 + 14226 0.72 0.564801
Target:  5'- cGGCGCGcGuCGUGCGUaucgggccggGCAACGAcGACCg -3'
miRNA:   3'- uCUGCGU-C-GCGCGCA----------UGUUGUU-CUGG- -5'
23406 5' -52.8 NC_005259.1 + 17782 0.72 0.564801
Target:  5'- -aGCGCAccgaGCGUGCGcaccgcgAUAGCGAGGCCg -3'
miRNA:   3'- ucUGCGU----CGCGCGCa------UGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 63832 0.72 0.575662
Target:  5'- -cGCGCAGCguuucgaggcaaGCGCGUAcCGGCGAGgugGCCg -3'
miRNA:   3'- ucUGCGUCG------------CGCGCAU-GUUGUUC---UGG- -5'
23406 5' -52.8 NC_005259.1 + 51521 0.72 0.575662
Target:  5'- cGACGC-GCGUGaccuCGUGC-ACGGGGCCg -3'
miRNA:   3'- uCUGCGuCGCGC----GCAUGuUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 60792 0.71 0.619489
Target:  5'- cAGAU-CAGC-CGCGUACAccCGAGGCCg -3'
miRNA:   3'- -UCUGcGUCGcGCGCAUGUu-GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 15413 0.7 0.696213
Target:  5'- ---gGguGCGCuGCGUGCcacCAAGGCCg -3'
miRNA:   3'- ucugCguCGCG-CGCAUGuu-GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 41126 0.7 0.696213
Target:  5'- cGGCGguGCcCGCGUcgcGCAGCcucAGGCCc -3'
miRNA:   3'- uCUGCguCGcGCGCA---UGUUGu--UCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.