Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23406 | 5' | -52.8 | NC_005259.1 | + | 53053 | 0.66 | 0.899893 |
Target: 5'- gGGAaauUGCuGCGUGaCGggguUGACAAGACCg -3' miRNA: 3'- -UCU---GCGuCGCGC-GCau--GUUGUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 67967 | 0.72 | 0.564801 |
Target: 5'- --cUGUAGCGCGCGcaGCGGCGuGGCCa -3' miRNA: 3'- ucuGCGUCGCGCGCa-UGUUGUuCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 14226 | 0.72 | 0.564801 |
Target: 5'- cGGCGCGcGuCGUGCGUaucgggccggGCAACGAcGACCg -3' miRNA: 3'- uCUGCGU-C-GCGCGCA----------UGUUGUU-CUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 17782 | 0.72 | 0.564801 |
Target: 5'- -aGCGCAccgaGCGUGCGcaccgcgAUAGCGAGGCCg -3' miRNA: 3'- ucUGCGU----CGCGCGCa------UGUUGUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 51521 | 0.72 | 0.575662 |
Target: 5'- cGACGC-GCGUGaccuCGUGC-ACGGGGCCg -3' miRNA: 3'- uCUGCGuCGCGC----GCAUGuUGUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 63832 | 0.72 | 0.575662 |
Target: 5'- -cGCGCAGCguuucgaggcaaGCGCGUAcCGGCGAGgugGCCg -3' miRNA: 3'- ucUGCGUCG------------CGCGCAU-GUUGUUC---UGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 60792 | 0.71 | 0.619489 |
Target: 5'- cAGAU-CAGC-CGCGUACAccCGAGGCCg -3' miRNA: 3'- -UCUGcGUCGcGCGCAUGUu-GUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 55764 | 0.7 | 0.696213 |
Target: 5'- -uGCGCAGC-CGCGUACGcgucgaGCucGGCCc -3' miRNA: 3'- ucUGCGUCGcGCGCAUGU------UGuuCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 15413 | 0.7 | 0.696213 |
Target: 5'- ---gGguGCGCuGCGUGCcacCAAGGCCg -3' miRNA: 3'- ucugCguCGCG-CGCAUGuu-GUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 66912 | 0.72 | 0.553993 |
Target: 5'- uAGAUccgGCAGCGCGCGgu--GCucGACCg -3' miRNA: 3'- -UCUG---CGUCGCGCGCauguUGuuCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 5551 | 0.72 | 0.553993 |
Target: 5'- cGAgGCcGCGUGgGguggugACGGCGAGACCg -3' miRNA: 3'- uCUgCGuCGCGCgCa-----UGUUGUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 66357 | 0.72 | 0.543248 |
Target: 5'- aGGACGCAGCgaucuGCGCGUG--GCAcaGCCa -3' miRNA: 3'- -UCUGCGUCG-----CGCGCAUguUGUucUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 16794 | 0.78 | 0.294802 |
Target: 5'- cGACGCGGU-CGCGUACAucgcgcuCGGGGCCg -3' miRNA: 3'- uCUGCGUCGcGCGCAUGUu------GUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 6518 | 0.75 | 0.393588 |
Target: 5'- cGACGCcguGCGCGCG-ACAACc-GGCCu -3' miRNA: 3'- uCUGCGu--CGCGCGCaUGUUGuuCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 17061 | 0.75 | 0.402733 |
Target: 5'- gAGGCGguGCGCGCauuuGUGCGuCAGGccGCCg -3' miRNA: 3'- -UCUGCguCGCGCG----CAUGUuGUUC--UGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 55298 | 0.75 | 0.412012 |
Target: 5'- gGGACGUuuGGC-CGCGUGCGAC--GACCa -3' miRNA: 3'- -UCUGCG--UCGcGCGCAUGUUGuuCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 24058 | 0.75 | 0.421422 |
Target: 5'- cGGCGCGGUGCucaaucuCGUGCAccGCGAGAUCa -3' miRNA: 3'- uCUGCGUCGCGc------GCAUGU--UGUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 14046 | 0.75 | 0.430961 |
Target: 5'- ---gGCAGCGCauCGUcgGCGACGAGACCa -3' miRNA: 3'- ucugCGUCGCGc-GCA--UGUUGUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 17185 | 0.74 | 0.440625 |
Target: 5'- cGGCGCAGgaagcCGCGCGUGaggcggguaGACGGGACUg -3' miRNA: 3'- uCUGCGUC-----GCGCGCAUg--------UUGUUCUGG- -5' |
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23406 | 5' | -52.8 | NC_005259.1 | + | 25492 | 0.74 | 0.470333 |
Target: 5'- aAGGCGCucGCGCGUGaggGCAAaAAGGCCc -3' miRNA: 3'- -UCUGCGu-CGCGCGCa--UGUUgUUCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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