miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23406 5' -52.8 NC_005259.1 + 2530 0.69 0.759679
Target:  5'- cGACGCcaccGCGCGCaUugGACA-GAUCg -3'
miRNA:   3'- uCUGCGu---CGCGCGcAugUUGUuCUGG- -5'
23406 5' -52.8 NC_005259.1 + 2646 0.67 0.862158
Target:  5'- aGGGCGguGuCGCGgGcACGuuCAAGAUCa -3'
miRNA:   3'- -UCUGCguC-GCGCgCaUGUu-GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 2928 0.66 0.892864
Target:  5'- cGGA-GUAGCGaaaGCGUccaagGCGcGCGAGACCc -3'
miRNA:   3'- -UCUgCGUCGCg--CGCA-----UGU-UGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 3190 0.66 0.88557
Target:  5'- cGuCGguGCGCGCaccACGAUguGGGGCCu -3'
miRNA:   3'- uCuGCguCGCGCGca-UGUUG--UUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 5551 0.72 0.553993
Target:  5'- cGAgGCcGCGUGgGguggugACGGCGAGACCg -3'
miRNA:   3'- uCUgCGuCGCGCgCa-----UGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 5659 0.69 0.728379
Target:  5'- cGGGCGCuacaCGCGCG-ACAACAucGCCc -3'
miRNA:   3'- -UCUGCGuc--GCGCGCaUGUUGUucUGG- -5'
23406 5' -52.8 NC_005259.1 + 6518 0.75 0.393588
Target:  5'- cGACGCcguGCGCGCG-ACAACc-GGCCu -3'
miRNA:   3'- uCUGCGu--CGCGCGCaUGUUGuuCUGG- -5'
23406 5' -52.8 NC_005259.1 + 8513 0.69 0.717738
Target:  5'- cAGACGCAGCGaGC--ACGACA--GCCa -3'
miRNA:   3'- -UCUGCGUCGCgCGcaUGUUGUucUGG- -5'
23406 5' -52.8 NC_005259.1 + 8659 0.67 0.818452
Target:  5'- uGugGUcgGGCugccaCGCGgGCAACGGGGCCg -3'
miRNA:   3'- uCugCG--UCGc----GCGCaUGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 11068 0.69 0.759679
Target:  5'- cGGCuCAGCGUGgaagcCGUACGGCucGACCu -3'
miRNA:   3'- uCUGcGUCGCGC-----GCAUGUUGuuCUGG- -5'
23406 5' -52.8 NC_005259.1 + 12027 0.67 0.853864
Target:  5'- -uACGguGCGgGCG-GCAACcgguacucaccGAGGCCg -3'
miRNA:   3'- ucUGCguCGCgCGCaUGUUG-----------UUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 12816 0.69 0.738924
Target:  5'- -cGCGCAcGCGCGCGUGaggGugGGGAUa -3'
miRNA:   3'- ucUGCGU-CGCGCGCAUg--UugUUCUGg -5'
23406 5' -52.8 NC_005259.1 + 14046 0.75 0.430961
Target:  5'- ---gGCAGCGCauCGUcgGCGACGAGACCa -3'
miRNA:   3'- ucugCGUCGCGc-GCA--UGUUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 14226 0.72 0.564801
Target:  5'- cGGCGCGcGuCGUGCGUaucgggccggGCAACGAcGACCg -3'
miRNA:   3'- uCUGCGU-C-GCGCGCA----------UGUUGUU-CUGG- -5'
23406 5' -52.8 NC_005259.1 + 15413 0.7 0.696213
Target:  5'- ---gGguGCGCuGCGUGCcacCAAGGCCg -3'
miRNA:   3'- ucugCguCGCG-CGCAUGuu-GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 16490 0.69 0.717738
Target:  5'- aGGGCGCAcccGCGCGCaugGCcgagAGCGAGGCg -3'
miRNA:   3'- -UCUGCGU---CGCGCGca-UG----UUGUUCUGg -5'
23406 5' -52.8 NC_005259.1 + 16794 0.78 0.294802
Target:  5'- cGACGCGGU-CGCGUACAucgcgcuCGGGGCCg -3'
miRNA:   3'- uCUGCGUCGcGCGCAUGUu------GUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 17061 0.75 0.402733
Target:  5'- gAGGCGguGCGCGCauuuGUGCGuCAGGccGCCg -3'
miRNA:   3'- -UCUGCguCGCGCG----CAUGUuGUUC--UGG- -5'
23406 5' -52.8 NC_005259.1 + 17185 0.74 0.440625
Target:  5'- cGGCGCAGgaagcCGCGCGUGaggcggguaGACGGGACUg -3'
miRNA:   3'- uCUGCGUC-----GCGCGCAUg--------UUGUUCUGG- -5'
23406 5' -52.8 NC_005259.1 + 17782 0.72 0.564801
Target:  5'- -aGCGCAccgaGCGUGCGcaccgcgAUAGCGAGGCCg -3'
miRNA:   3'- ucUGCGU----CGCGCGCa------UGUUGUUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.