miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23417 5' -65 NC_005259.1 + 68849 0.66 0.35764
Target:  5'- -aGGUGGgCCaucaugucgacuUGCCCG-CGCCgGGCGCg -3'
miRNA:   3'- cgCCGCCgGG------------GCGGGUaGCGG-CUGCG- -5'
23417 5' -65 NC_005259.1 + 67980 0.7 0.186055
Target:  5'- aGCGGCguGGCCaCCGCCgCGagCGUCGACu- -3'
miRNA:   3'- -CGCCG--CCGG-GGCGG-GUa-GCGGCUGcg -5'
23417 5' -65 NC_005259.1 + 67167 0.66 0.327503
Target:  5'- gGUGGCGGCCaugCCGCCgAUgaUGCC--CGCc -3'
miRNA:   3'- -CGCCGCCGG---GGCGGgUA--GCGGcuGCG- -5'
23417 5' -65 NC_005259.1 + 66274 0.67 0.292536
Target:  5'- gGCGGCGGCUCaCGCcgccaCCAUCcacuCUGcGCGCa -3'
miRNA:   3'- -CGCCGCCGGG-GCG-----GGUAGc---GGC-UGCG- -5'
23417 5' -65 NC_005259.1 + 63612 0.67 0.299289
Target:  5'- aUGGCGGCCaccgaCGCCUgauagAUCaUCGugGCg -3'
miRNA:   3'- cGCCGCCGGg----GCGGG-----UAGcGGCugCG- -5'
23417 5' -65 NC_005259.1 + 62013 0.7 0.181524
Target:  5'- uGCGGUGuaCCCGCUCGcgcugugUGUCGACGUa -3'
miRNA:   3'- -CGCCGCcgGGGCGGGUa------GCGGCUGCG- -5'
23417 5' -65 NC_005259.1 + 61763 0.7 0.186055
Target:  5'- uGCGGCGGCaaucaCCGCCgCAUUcugcacaCCGGCGg -3'
miRNA:   3'- -CGCCGCCGg----GGCGG-GUAGc------GGCUGCg -5'
23417 5' -65 NC_005259.1 + 60438 0.76 0.066646
Target:  5'- cGgGGCGGCCaCGCCCGacaccUCGauuCCGACGCu -3'
miRNA:   3'- -CgCCGCCGGgGCGGGU-----AGC---GGCUGCG- -5'
23417 5' -65 NC_005259.1 + 60345 0.77 0.058385
Target:  5'- gGCGGCgaucaggucgaGGCCCUGCCCGaaaucccgccaaUCGCCGGacaGCg -3'
miRNA:   3'- -CGCCG-----------CCGGGGCGGGU------------AGCGGCUg--CG- -5'
23417 5' -65 NC_005259.1 + 60127 0.72 0.124471
Target:  5'- uCGGCGGCCUCGUCCugcgcggccuUgGCCGcCGCc -3'
miRNA:   3'- cGCCGCCGGGGCGGGu---------AgCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 58918 0.67 0.285902
Target:  5'- uCGGCGGUCuuG-UCGUCGgCgGGCGCg -3'
miRNA:   3'- cGCCGCCGGggCgGGUAGC-GgCUGCG- -5'
23417 5' -65 NC_005259.1 + 58691 0.68 0.260554
Target:  5'- cGCGG-GG-UCgGCUCGUCGCCGcCGCc -3'
miRNA:   3'- -CGCCgCCgGGgCGGGUAGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 58448 0.67 0.29725
Target:  5'- uCGGUGGCCUuggugaucgCGgCCAccagugcguggcugUCGCCGACGa -3'
miRNA:   3'- cGCCGCCGGG---------GCgGGU--------------AGCGGCUGCg -5'
23417 5' -65 NC_005259.1 + 57148 0.67 0.285902
Target:  5'- aGUaGUGGCCCU-CCCAcgUGCCGaACGCg -3'
miRNA:   3'- -CGcCGCCGGGGcGGGUa-GCGGC-UGCG- -5'
23417 5' -65 NC_005259.1 + 56258 0.66 0.334858
Target:  5'- uCGGCGGCCuuGag---CGCCGcCGCc -3'
miRNA:   3'- cGCCGCCGGggCggguaGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 53460 0.67 0.306162
Target:  5'- aCGGCGG-CUgGCUCGUCGuCCGGCccGCc -3'
miRNA:   3'- cGCCGCCgGGgCGGGUAGC-GGCUG--CG- -5'
23417 5' -65 NC_005259.1 + 53240 0.66 0.342332
Target:  5'- -aGGUucGcGCCgCCGacaCCGUCGCCGcCGCu -3'
miRNA:   3'- cgCCG--C-CGG-GGCg--GGUAGCGGCuGCG- -5'
23417 5' -65 NC_005259.1 + 53194 0.67 0.279388
Target:  5'- cGCGGUGuCCCCGgCgaucagauucgCGUCGCCcGCGCc -3'
miRNA:   3'- -CGCCGCcGGGGCgG-----------GUAGCGGcUGCG- -5'
23417 5' -65 NC_005259.1 + 52459 0.68 0.260554
Target:  5'- gGCGGaUGGCagaccaCCGCCCGcgaauaCGUCGAgGCg -3'
miRNA:   3'- -CGCC-GCCGg-----GGCGGGUa-----GCGGCUgCG- -5'
23417 5' -65 NC_005259.1 + 52346 0.68 0.242193
Target:  5'- cCGGUGuGCCgCUGuucgucuCCCAUCGCCGACu- -3'
miRNA:   3'- cGCCGC-CGG-GGC-------GGGUAGCGGCUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.