miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23423 3' -60.7 NC_005259.1 + 14567 0.66 0.545188
Target:  5'- aGCGgGGaCcGGCGaacaCCAUCGCGcUGGCc -3'
miRNA:   3'- -CGCgCC-GcCCGUa---GGUAGCGCuGCCG- -5'
23423 3' -60.7 NC_005259.1 + 58564 0.66 0.545188
Target:  5'- cGgGCGGuUGGGCcgg-AUCGCGgcGCGGCu -3'
miRNA:   3'- -CgCGCC-GCCCGuaggUAGCGC--UGCCG- -5'
23423 3' -60.7 NC_005259.1 + 49591 0.66 0.53915
Target:  5'- gGCGgGGUcagcaccucgaccucGGGCAgcucaUCAUCGUcaucGGCGGCa -3'
miRNA:   3'- -CGCgCCG---------------CCCGUa----GGUAGCG----CUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 33586 0.66 0.535137
Target:  5'- cGCGUcGCGGGCcaCCGagGCG-CGGUc -3'
miRNA:   3'- -CGCGcCGCCCGuaGGUagCGCuGCCG- -5'
23423 3' -60.7 NC_005259.1 + 40120 0.66 0.535137
Target:  5'- uGCGCucguggaauuGGCGGGCGagcucgCCGUCGguUGuCGGUg -3'
miRNA:   3'- -CGCG----------CCGCCCGUa-----GGUAGC--GCuGCCG- -5'
23423 3' -60.7 NC_005259.1 + 50658 0.66 0.525151
Target:  5'- uCGgGGCcauaGGGCA-CCAgCGCGuCGGUg -3'
miRNA:   3'- cGCgCCG----CCCGUaGGUaGCGCuGCCG- -5'
23423 3' -60.7 NC_005259.1 + 66124 0.66 0.515237
Target:  5'- cGCGCGuCGaGCAggCCAUCa-GACGGCg -3'
miRNA:   3'- -CGCGCcGCcCGUa-GGUAGcgCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 944 0.66 0.515237
Target:  5'- -aGCGGaaaaguCGGGCAgCUcgCGCaACGGCu -3'
miRNA:   3'- cgCGCC------GCCCGUaGGuaGCGcUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 48448 0.66 0.51425
Target:  5'- gGCaGCGGCaGcGCGUUCcaccgcgcgccggGUCGCGuCGGCc -3'
miRNA:   3'- -CG-CGCCGcC-CGUAGG-------------UAGCGCuGCCG- -5'
23423 3' -60.7 NC_005259.1 + 18780 0.66 0.505399
Target:  5'- uCGCGGUGGGCAa-----GCGGUGGCa -3'
miRNA:   3'- cGCGCCGCCCGUagguagCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 29964 0.66 0.505399
Target:  5'- gGUGgGGCGGGCGgugaCCGUccaacggacccCGC-ACGGUg -3'
miRNA:   3'- -CGCgCCGCCCGUa---GGUA-----------GCGcUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 44908 0.66 0.505399
Target:  5'- cGCGCuGUGGGCcgCCGcauaCGCGcugaucggguccAUGGCa -3'
miRNA:   3'- -CGCGcCGCCCGuaGGUa---GCGC------------UGCCG- -5'
23423 3' -60.7 NC_005259.1 + 17538 0.66 0.505399
Target:  5'- aGCGaCGGCGGGCAUuucuacuucaCCGUgCcCGACGa- -3'
miRNA:   3'- -CGC-GCCGCCCGUA----------GGUA-GcGCUGCcg -5'
23423 3' -60.7 NC_005259.1 + 29129 0.66 0.505399
Target:  5'- aGCGCGGC-GGUAUUCGccUCGCucaccgcgcuCGGCu -3'
miRNA:   3'- -CGCGCCGcCCGUAGGU--AGCGcu--------GCCG- -5'
23423 3' -60.7 NC_005259.1 + 15588 0.66 0.495643
Target:  5'- aGCGCGaCGGGCcgCaugaGCuACGGCa -3'
miRNA:   3'- -CGCGCcGCCCGuaGguagCGcUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 50245 0.66 0.495643
Target:  5'- gGCGCGGaucguggccaaCGGGCuacucgCUGUCGuCGGUGGCg -3'
miRNA:   3'- -CGCGCC-----------GCCCGua----GGUAGC-GCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 32878 0.66 0.493702
Target:  5'- cGCGCGGUgaucgauucaccggGGGCGagggugagCCAcccggcccgcucgggCGCGGCGGUa -3'
miRNA:   3'- -CGCGCCG--------------CCCGUa-------GGUa--------------GCGCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 56027 0.67 0.476395
Target:  5'- uCGCcgGGCGGGacuUCC-UCG-GGCGGCu -3'
miRNA:   3'- cGCG--CCGCCCgu-AGGuAGCgCUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 4450 0.67 0.467854
Target:  5'- cGUGCGaGUGGGCAgcguaugggccaaggCCAUCG--GCGGUg -3'
miRNA:   3'- -CGCGC-CGCCCGUa--------------GGUAGCgcUGCCG- -5'
23423 3' -60.7 NC_005259.1 + 63552 0.67 0.439062
Target:  5'- uGCuCGGCGGcCA-CCGaCGCGACGaGCg -3'
miRNA:   3'- -CGcGCCGCCcGUaGGUaGCGCUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.