miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23425 3' -55.9 NC_005259.1 + 3098 0.84 0.066755
Target:  5'- gCAGCGaUGAGCGGGCGGCcauuGCGCGGCa -3'
miRNA:   3'- aGUUGC-GCUCGCCUGCCGu---CGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 36240 0.81 0.110855
Target:  5'- cCAGCGCGAGCGccugcguCGGCAGCGCcACg -3'
miRNA:   3'- aGUUGCGCUCGCcu-----GCCGUCGUGuUG- -5'
23425 3' -55.9 NC_005259.1 + 47071 0.73 0.317773
Target:  5'- gCGAgGCGAGCGccgaGACgaugGGCAGCACGAUc -3'
miRNA:   3'- aGUUgCGCUCGC----CUG----CCGUCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 10332 0.73 0.32554
Target:  5'- cUCGGCGaCGGGCucGGCGGCAGCGggcuCGACa -3'
miRNA:   3'- -AGUUGC-GCUCGc-CUGCCGUCGU----GUUG- -5'
23425 3' -55.9 NC_005259.1 + 4257 0.73 0.349678
Target:  5'- cUCGACuGCGAGgacaaCGGGCGGCuGCGCuGCc -3'
miRNA:   3'- -AGUUG-CGCUC-----GCCUGCCGuCGUGuUG- -5'
23425 3' -55.9 NC_005259.1 + 3321 0.72 0.383799
Target:  5'- gUCGACGUGAGCgccGGGCaGCucugcgugcucGGCACGACu -3'
miRNA:   3'- -AGUUGCGCUCG---CCUGcCG-----------UCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 44293 0.71 0.40988
Target:  5'- cCAGCGCGAGCGGguugcccucuuugACGaGCGuGUugAGCg -3'
miRNA:   3'- aGUUGCGCUCGCC-------------UGC-CGU-CGugUUG- -5'
23425 3' -55.9 NC_005259.1 + 8217 0.71 0.420057
Target:  5'- gCAACaGCGAGCGuGCGGUGGUGcCGACa -3'
miRNA:   3'- aGUUG-CGCUCGCcUGCCGUCGU-GUUG- -5'
23425 3' -55.9 NC_005259.1 + 1976 0.71 0.42944
Target:  5'- cCGGCGCuacacGAGCGGuCGG-AGUACAACu -3'
miRNA:   3'- aGUUGCG-----CUCGCCuGCCgUCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 66256 0.71 0.438946
Target:  5'- gCAGCGCGGcccgcGcCGGGCGGCGGCuCAc- -3'
miRNA:   3'- aGUUGCGCU-----C-GCCUGCCGUCGuGUug -5'
23425 3' -55.9 NC_005259.1 + 58932 0.71 0.438946
Target:  5'- gUCGGCGgGcGCGG-UGGCAGCGuCGGCc -3'
miRNA:   3'- -AGUUGCgCuCGCCuGCCGUCGU-GUUG- -5'
23425 3' -55.9 NC_005259.1 + 15586 0.71 0.448571
Target:  5'- cCAGCGCGA-CGGgccgcaugagcuACGGCAGCcccgaguuGCAGCa -3'
miRNA:   3'- aGUUGCGCUcGCC------------UGCCGUCG--------UGUUG- -5'
23425 3' -55.9 NC_005259.1 + 49992 0.71 0.455378
Target:  5'- -gGAuCGCGuGCGGACGGCugcccucgugcacgGGCGCuGCg -3'
miRNA:   3'- agUU-GCGCuCGCCUGCCG--------------UCGUGuUG- -5'
23425 3' -55.9 NC_005259.1 + 64613 0.7 0.468164
Target:  5'- -uGACgGCGAGCGcGACgGGCAGCA--GCg -3'
miRNA:   3'- agUUG-CGCUCGC-CUG-CCGUCGUguUG- -5'
23425 3' -55.9 NC_005259.1 + 35668 0.7 0.468164
Target:  5'- cCAGCGCG-GUGG-UGGU-GCACAGCg -3'
miRNA:   3'- aGUUGCGCuCGCCuGCCGuCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 48440 0.7 0.498349
Target:  5'- -aGGCGCGAGgcaGCGGCAGCGCGu- -3'
miRNA:   3'- agUUGCGCUCgccUGCCGUCGUGUug -5'
23425 3' -55.9 NC_005259.1 + 62447 0.69 0.518947
Target:  5'- gCAGCaGUGAGU-GugGGCAGUACAAa -3'
miRNA:   3'- aGUUG-CGCUCGcCugCCGUCGUGUUg -5'
23425 3' -55.9 NC_005259.1 + 7340 0.69 0.523108
Target:  5'- --uACGuCGAGgcCGGACagacguucgugcuguGGCAGCACAACa -3'
miRNA:   3'- aguUGC-GCUC--GCCUG---------------CCGUCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 6543 0.69 0.539873
Target:  5'- cUCGGgGCGAGCGGugaaGCuguGCGCGGCg -3'
miRNA:   3'- -AGUUgCGCUCGCCugc-CGu--CGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 23587 0.69 0.539873
Target:  5'- cCGugGUGAGCguGGcACGGCAGUuccccgcgugGCGGCa -3'
miRNA:   3'- aGUugCGCUCG--CC-UGCCGUCG----------UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.