miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23425 3' -55.9 NC_005259.1 + 199 0.67 0.658305
Target:  5'- -uGGCGCGuGGCGcGACGGCAaGCAg--- -3'
miRNA:   3'- agUUGCGC-UCGC-CUGCCGU-CGUguug -5'
23425 3' -55.9 NC_005259.1 + 936 0.68 0.582504
Target:  5'- --uGCGCGAcaGCGGAaaagucgGGCAGCucgcGCAACg -3'
miRNA:   3'- aguUGCGCU--CGCCUg------CCGUCG----UGUUG- -5'
23425 3' -55.9 NC_005259.1 + 1976 0.71 0.42944
Target:  5'- cCGGCGCuacacGAGCGGuCGG-AGUACAACu -3'
miRNA:   3'- aGUUGCG-----CUCGCCuGCCgUCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 2035 0.68 0.614922
Target:  5'- cUCAGUGCG-GUGGGCGGUcaccGGCACcgaGACa -3'
miRNA:   3'- -AGUUGCGCuCGCCUGCCG----UCGUG---UUG- -5'
23425 3' -55.9 NC_005259.1 + 3098 0.84 0.066755
Target:  5'- gCAGCGaUGAGCGGGCGGCcauuGCGCGGCa -3'
miRNA:   3'- aGUUGC-GCUCGCCUGCCGu---CGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 3321 0.72 0.383799
Target:  5'- gUCGACGUGAGCgccGGGCaGCucugcgugcucGGCACGACu -3'
miRNA:   3'- -AGUUGCGCUCG---CCUGcCG-----------UCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 3858 0.66 0.722456
Target:  5'- gUCGACGCcggucGAGCGccuCGagcccaccccGCAGCGCGACa -3'
miRNA:   3'- -AGUUGCG-----CUCGCcu-GC----------CGUCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 4257 0.73 0.349678
Target:  5'- cUCGACuGCGAGgacaaCGGGCGGCuGCGCuGCc -3'
miRNA:   3'- -AGUUG-CGCUC-----GCCUGCCGuCGUGuUG- -5'
23425 3' -55.9 NC_005259.1 + 5719 0.69 0.554691
Target:  5'- cCAGCGC---CGGACGGCGGCcauucucgcggccaaGCGGCg -3'
miRNA:   3'- aGUUGCGcucGCCUGCCGUCG---------------UGUUG- -5'
23425 3' -55.9 NC_005259.1 + 6202 0.66 0.701306
Target:  5'- gCAGCGUGAGCGGggugaGCcGCcGCGcCGACa -3'
miRNA:   3'- aGUUGCGCUCGCC-----UGcCGuCGU-GUUG- -5'
23425 3' -55.9 NC_005259.1 + 6285 0.66 0.701306
Target:  5'- cUCGugGuCGAGUGGuGCGGUaccgaugucgacGGCAUGACc -3'
miRNA:   3'- -AGUugC-GCUCGCC-UGCCG------------UCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 6543 0.69 0.539873
Target:  5'- cUCGGgGCGAGCGGugaaGCuguGCGCGGCg -3'
miRNA:   3'- -AGUUgCGCUCGCCugc-CGu--CGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 7340 0.69 0.523108
Target:  5'- --uACGuCGAGgcCGGACagacguucgugcuguGGCAGCACAACa -3'
miRNA:   3'- aguUGC-GCUC--GCCUG---------------CCGUCGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 8217 0.71 0.420057
Target:  5'- gCAACaGCGAGCGuGCGGUGGUGcCGACa -3'
miRNA:   3'- aGUUG-CGCUCGCcUGCCGUCGU-GUUG- -5'
23425 3' -55.9 NC_005259.1 + 10332 0.73 0.32554
Target:  5'- cUCGGCGaCGGGCucGGCGGCAGCGggcuCGACa -3'
miRNA:   3'- -AGUUGC-GCUCGc-CUGCCGUCGU----GUUG- -5'
23425 3' -55.9 NC_005259.1 + 10440 0.67 0.668036
Target:  5'- cUCGACauCGAGUGGcucgACGGCGguguccuGCGCAGCg -3'
miRNA:   3'- -AGUUGc-GCUCGCC----UGCCGU-------CGUGUUG- -5'
23425 3' -55.9 NC_005259.1 + 15586 0.71 0.448571
Target:  5'- cCAGCGCGA-CGGgccgcaugagcuACGGCAGCcccgaguuGCAGCa -3'
miRNA:   3'- aGUUGCGCUcGCC------------UGCCGUCG--------UGUUG- -5'
23425 3' -55.9 NC_005259.1 + 19195 0.67 0.636622
Target:  5'- cUCGACaGCGAgcucgugguGCGGGCGGCGacGUGgGACa -3'
miRNA:   3'- -AGUUG-CGCU---------CGCCUGCCGU--CGUgUUG- -5'
23425 3' -55.9 NC_005259.1 + 23587 0.69 0.539873
Target:  5'- cCGugGUGAGCguGGcACGGCAGUuccccgcgugGCGGCa -3'
miRNA:   3'- aGUugCGCUCG--CC-UGCCGUCG----------UGUUG- -5'
23425 3' -55.9 NC_005259.1 + 26403 0.66 0.753499
Target:  5'- cCGACGcCGGGC--GCGGCGGUGCcGCc -3'
miRNA:   3'- aGUUGC-GCUCGccUGCCGUCGUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.