Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 26403 | 0.66 | 0.753499 |
Target: 5'- cCGACGcCGGGC--GCGGCGGUGCcGCc -3' miRNA: 3'- aGUUGC-GCUCGccUGCCGUCGUGuUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 49992 | 0.71 | 0.455378 |
Target: 5'- -gGAuCGCGuGCGGACGGCugcccucgugcacgGGCGCuGCg -3' miRNA: 3'- agUU-GCGCuCGCCUGCCG--------------UCGUGuUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 64613 | 0.7 | 0.468164 |
Target: 5'- -uGACgGCGAGCGcGACgGGCAGCA--GCg -3' miRNA: 3'- agUUG-CGCUCGC-CUG-CCGUCGUguUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 35668 | 0.7 | 0.468164 |
Target: 5'- cCAGCGCG-GUGG-UGGU-GCACAGCg -3' miRNA: 3'- aGUUGCGCuCGCCuGCCGuCGUGUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 48440 | 0.7 | 0.498349 |
Target: 5'- -aGGCGCGAGgcaGCGGCAGCGCGu- -3' miRNA: 3'- agUUGCGCUCgccUGCCGUCGUGUug -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 62447 | 0.69 | 0.518947 |
Target: 5'- gCAGCaGUGAGU-GugGGCAGUACAAa -3' miRNA: 3'- aGUUG-CGCUCGcCugCCGUCGUGUUg -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 7340 | 0.69 | 0.523108 |
Target: 5'- --uACGuCGAGgcCGGACagacguucgugcuguGGCAGCACAACa -3' miRNA: 3'- aguUGC-GCUC--GCCUG---------------CCGUCGUGUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 6543 | 0.69 | 0.539873 |
Target: 5'- cUCGGgGCGAGCGGugaaGCuguGCGCGGCg -3' miRNA: 3'- -AGUUgCGCUCGCCugc-CGu--CGUGUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 23587 | 0.69 | 0.539873 |
Target: 5'- cCGugGUGAGCguGGcACGGCAGUuccccgcgugGCGGCa -3' miRNA: 3'- aGUugCGCUCG--CC-UGCCGUCG----------UGUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 15586 | 0.71 | 0.448571 |
Target: 5'- cCAGCGCGA-CGGgccgcaugagcuACGGCAGCcccgaguuGCAGCa -3' miRNA: 3'- aGUUGCGCUcGCC------------UGCCGUCG--------UGUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 66256 | 0.71 | 0.438946 |
Target: 5'- gCAGCGCGGcccgcGcCGGGCGGCGGCuCAc- -3' miRNA: 3'- aGUUGCGCU-----C-GCCUGCCGUCGuGUug -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 58932 | 0.71 | 0.438946 |
Target: 5'- gUCGGCGgGcGCGG-UGGCAGCGuCGGCc -3' miRNA: 3'- -AGUUGCgCuCGCCuGCCGUCGU-GUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 36240 | 0.81 | 0.110855 |
Target: 5'- cCAGCGCGAGCGccugcguCGGCAGCGCcACg -3' miRNA: 3'- aGUUGCGCUCGCcu-----GCCGUCGUGuUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 47071 | 0.73 | 0.317773 |
Target: 5'- gCGAgGCGAGCGccgaGACgaugGGCAGCACGAUc -3' miRNA: 3'- aGUUgCGCUCGC----CUG----CCGUCGUGUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 10332 | 0.73 | 0.32554 |
Target: 5'- cUCGGCGaCGGGCucGGCGGCAGCGggcuCGACa -3' miRNA: 3'- -AGUUGC-GCUCGc-CUGCCGUCGU----GUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 4257 | 0.73 | 0.349678 |
Target: 5'- cUCGACuGCGAGgacaaCGGGCGGCuGCGCuGCc -3' miRNA: 3'- -AGUUG-CGCUC-----GCCUGCCGuCGUGuUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 3321 | 0.72 | 0.383799 |
Target: 5'- gUCGACGUGAGCgccGGGCaGCucugcgugcucGGCACGACu -3' miRNA: 3'- -AGUUGCGCUCG---CCUGcCG-----------UCGUGUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 44293 | 0.71 | 0.40988 |
Target: 5'- cCAGCGCGAGCGGguugcccucuuugACGaGCGuGUugAGCg -3' miRNA: 3'- aGUUGCGCUCGCC-------------UGC-CGU-CGugUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 8217 | 0.71 | 0.420057 |
Target: 5'- gCAACaGCGAGCGuGCGGUGGUGcCGACa -3' miRNA: 3'- aGUUG-CGCUCGCcUGCCGUCGU-GUUG- -5' |
|||||||
23425 | 3' | -55.9 | NC_005259.1 | + | 1976 | 0.71 | 0.42944 |
Target: 5'- cCGGCGCuacacGAGCGGuCGG-AGUACAACu -3' miRNA: 3'- aGUUGCG-----CUCGCCuGCCgUCGUGUUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home