Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23425 | 5' | -56.2 | NC_005259.1 | + | 43816 | 0.66 | 0.766445 |
Target: 5'- uUGCCGGGcgUACCgcCGGacacagggccgccGCUCGCCa -3' miRNA: 3'- gAUGGCCCa-GUGGaaGCU-------------CGAGUGGc -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 56311 | 0.66 | 0.767432 |
Target: 5'- -gGCCGGacccucGUCGCCgUCGAGCaauCCGa -3' miRNA: 3'- gaUGGCC------CAGUGGaAGCUCGaguGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 40024 | 0.66 | 0.757501 |
Target: 5'- -gACCGGGaCGugaugCUUUGAGgUCGCCGg -3' miRNA: 3'- gaUGGCCCaGUg----GAAGCUCgAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 2742 | 0.66 | 0.747449 |
Target: 5'- aUGCCGaGGUCGCCgUCGuGCaguacgacCACCu -3' miRNA: 3'- gAUGGC-CCAGUGGaAGCuCGa-------GUGGc -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 53743 | 0.66 | 0.747449 |
Target: 5'- -cGCCGGGUguCCacUCGGuGC-CGCCGa -3' miRNA: 3'- gaUGGCCCAguGGa-AGCU-CGaGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 30157 | 0.66 | 0.747449 |
Target: 5'- -gACCGGGcCGCCUaCaGGC-CGCCa -3' miRNA: 3'- gaUGGCCCaGUGGAaGcUCGaGUGGc -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 60199 | 0.66 | 0.738308 |
Target: 5'- -gACCGGGccacgaucUCGCCgaucucgucggcgcUGAGCUCGCUGg -3' miRNA: 3'- gaUGGCCC--------AGUGGaa------------GCUCGAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 58208 | 0.66 | 0.737287 |
Target: 5'- uUGCCGGuGUCagggucagugGCC-UCGAGCUCGggcUCGg -3' miRNA: 3'- gAUGGCC-CAG----------UGGaAGCUCGAGU---GGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 22987 | 0.66 | 0.737287 |
Target: 5'- --cCCGGuGUCgacGCCgcCGAGgUCACCGa -3' miRNA: 3'- gauGGCC-CAG---UGGaaGCUCgAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 27323 | 0.66 | 0.727024 |
Target: 5'- uUGCgCGGGUUGCCUcgguaGAGCauccaaUCGCCGu -3' miRNA: 3'- gAUG-GCCCAGUGGAag---CUCG------AGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 31796 | 0.67 | 0.653264 |
Target: 5'- -gACCGcGUCGUCaUCGAGCUCgACCGa -3' miRNA: 3'- gaUGGCcCAGUGGaAGCUCGAG-UGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 31416 | 0.67 | 0.648989 |
Target: 5'- --cCCGaGGUCGCCgcugagcaacucgUUGAGC-CACCGg -3' miRNA: 3'- gauGGC-CCAGUGGa------------AGCUCGaGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 68630 | 0.67 | 0.674579 |
Target: 5'- -aGCCGGG-CACCcUCG-GCgaaCACCa -3' miRNA: 3'- gaUGGCCCaGUGGaAGCuCGa--GUGGc -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 6931 | 0.67 | 0.685185 |
Target: 5'- -cGCCGc--CGCCUUgaggcCGAGCUCGCCGc -3' miRNA: 3'- gaUGGCccaGUGGAA-----GCUCGAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 43262 | 0.67 | 0.685185 |
Target: 5'- -cGCCGGGU-GCCUgaGAGUUgACCGc -3' miRNA: 3'- gaUGGCCCAgUGGAagCUCGAgUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 52743 | 0.67 | 0.706241 |
Target: 5'- -cGCCGGGaUCgAUCUgcacaacaUCGAGCUCGUCGg -3' miRNA: 3'- gaUGGCCC-AG-UGGA--------AGCUCGAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 12137 | 0.68 | 0.631875 |
Target: 5'- -cACCGGGUCugCUUUcuugaUCACCGc -3' miRNA: 3'- gaUGGCCCAGugGAAGcucg-AGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 46788 | 0.68 | 0.621176 |
Target: 5'- -cGCCGGGccgaaCACCgagccugCGAGCgcacCACCGg -3' miRNA: 3'- gaUGGCCCa----GUGGaa-----GCUCGa---GUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 63659 | 0.68 | 0.599815 |
Target: 5'- -gGCCGGGaCGCCggacaccUCGGGCaccggcgCGCCGg -3' miRNA: 3'- gaUGGCCCaGUGGa------AGCUCGa------GUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 5074 | 0.68 | 0.599815 |
Target: 5'- -gGCCGGGUCGa---CGGGCcggugUCACCGg -3' miRNA: 3'- gaUGGCCCAGUggaaGCUCG-----AGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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