miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23425 5' -56.2 NC_005259.1 + 56311 0.66 0.767432
Target:  5'- -gGCCGGacccucGUCGCCgUCGAGCaauCCGa -3'
miRNA:   3'- gaUGGCC------CAGUGGaAGCUCGaguGGC- -5'
23425 5' -56.2 NC_005259.1 + 63659 0.68 0.599815
Target:  5'- -gGCCGGGaCGCCggacaccUCGGGCaccggcgCGCCGg -3'
miRNA:   3'- gaUGGCCCaGUGGa------AGCUCGa------GUGGC- -5'
23425 5' -56.2 NC_005259.1 + 46788 0.68 0.621176
Target:  5'- -cGCCGGGccgaaCACCgagccugCGAGCgcacCACCGg -3'
miRNA:   3'- gaUGGCCCa----GUGGaa-----GCUCGa---GUGGC- -5'
23425 5' -56.2 NC_005259.1 + 12137 0.68 0.631875
Target:  5'- -cACCGGGUCugCUUUcuugaUCACCGc -3'
miRNA:   3'- gaUGGCCCAGugGAAGcucg-AGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 8406 0.68 0.642574
Target:  5'- -aGCCGGGcCACCUcgcuggCGAGCaugcgaugcucgUUGCCGg -3'
miRNA:   3'- gaUGGCCCaGUGGAa-----GCUCG------------AGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 30323 0.68 0.642574
Target:  5'- -cGCCGcGUCguACCUgacacgcagcaCGAGCUCACCGu -3'
miRNA:   3'- gaUGGCcCAG--UGGAa----------GCUCGAGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 31416 0.67 0.648989
Target:  5'- --cCCGaGGUCGCCgcugagcaacucgUUGAGC-CACCGg -3'
miRNA:   3'- gauGGC-CCAGUGGa------------AGCUCGaGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 31796 0.67 0.653264
Target:  5'- -gACCGcGUCGUCaUCGAGCUCgACCGa -3'
miRNA:   3'- gaUGGCcCAGUGGaAGCUCGAG-UGGC- -5'
23425 5' -56.2 NC_005259.1 + 68630 0.67 0.674579
Target:  5'- -aGCCGGG-CACCcUCG-GCgaaCACCa -3'
miRNA:   3'- gaUGGCCCaGUGGaAGCuCGa--GUGGc -5'
23425 5' -56.2 NC_005259.1 + 5074 0.68 0.599815
Target:  5'- -gGCCGGGUCGa---CGGGCcggugUCACCGg -3'
miRNA:   3'- gaUGGCCCAGUggaaGCUCG-----AGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 45379 0.68 0.596618
Target:  5'- uUGCCcgaggaauuucucgGGGUCGCCgcCGAGCgCGCUGa -3'
miRNA:   3'- gAUGG--------------CCCAGUGGaaGCUCGaGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 68720 0.69 0.567987
Target:  5'- gUGCCcgagaacugGGGUCGCCgcuugcCGAGCUCGaccCCGg -3'
miRNA:   3'- gAUGG---------CCCAGUGGaa----GCUCGAGU---GGC- -5'
23425 5' -56.2 NC_005259.1 + 9535 0.77 0.2136
Target:  5'- -cGCCGGGUCACCggaGAGCUgC-CCGg -3'
miRNA:   3'- gaUGGCCCAGUGGaagCUCGA-GuGGC- -5'
23425 5' -56.2 NC_005259.1 + 58839 0.73 0.357635
Target:  5'- -cGCCGcccucGGUCucACCcUCGGGCUCGCCGu -3'
miRNA:   3'- gaUGGC-----CCAG--UGGaAGCUCGAGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 31293 0.72 0.409621
Target:  5'- uUGCCcGGUCugCgcaaCGAGCUUGCCGa -3'
miRNA:   3'- gAUGGcCCAGugGaa--GCUCGAGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 47888 0.71 0.437319
Target:  5'- -gGCCGGGUCAgCgUCG-GCUCGuuGa -3'
miRNA:   3'- gaUGGCCCAGUgGaAGCuCGAGUggC- -5'
23425 5' -56.2 NC_005259.1 + 12042 0.7 0.475858
Target:  5'- -aACCGGuacUCACCgaggcCGAGCUCugCGg -3'
miRNA:   3'- gaUGGCCc--AGUGGaa---GCUCGAGugGC- -5'
23425 5' -56.2 NC_005259.1 + 10751 0.7 0.475858
Target:  5'- gCUGCCGGGcgaUCAUCaugUCGGGCgggUCAUCGa -3'
miRNA:   3'- -GAUGGCCC---AGUGGa--AGCUCG---AGUGGC- -5'
23425 5' -56.2 NC_005259.1 + 14175 0.69 0.564825
Target:  5'- -cGCCGGGcggguggcaaccgcUCACCccCGAGCagGCCGg -3'
miRNA:   3'- gaUGGCCC--------------AGUGGaaGCUCGagUGGC- -5'
23425 5' -56.2 NC_005259.1 + 17337 0.69 0.567987
Target:  5'- gUGCCGGucaacGUCGCCgUCGAGgUCGgCGg -3'
miRNA:   3'- gAUGGCC-----CAGUGGaAGCUCgAGUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.