Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23425 | 5' | -56.2 | NC_005259.1 | + | 2742 | 0.66 | 0.747449 |
Target: 5'- aUGCCGaGGUCGCCgUCGuGCaguacgacCACCu -3' miRNA: 3'- gAUGGC-CCAGUGGaAGCuCGa-------GUGGc -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 5074 | 0.68 | 0.599815 |
Target: 5'- -gGCCGGGUCGa---CGGGCcggugUCACCGg -3' miRNA: 3'- gaUGGCCCAGUggaaGCUCG-----AGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 6931 | 0.67 | 0.685185 |
Target: 5'- -cGCCGc--CGCCUUgaggcCGAGCUCGCCGc -3' miRNA: 3'- gaUGGCccaGUGGAA-----GCUCGAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 8406 | 0.68 | 0.642574 |
Target: 5'- -aGCCGGGcCACCUcgcuggCGAGCaugcgaugcucgUUGCCGg -3' miRNA: 3'- gaUGGCCCaGUGGAa-----GCUCG------------AGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 9535 | 0.77 | 0.2136 |
Target: 5'- -cGCCGGGUCACCggaGAGCUgC-CCGg -3' miRNA: 3'- gaUGGCCCAGUGGaagCUCGA-GuGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 9706 | 0.78 | 0.176142 |
Target: 5'- -cACUGGG-CACCguccucgggccggUCGAGCUCGCCGa -3' miRNA: 3'- gaUGGCCCaGUGGa------------AGCUCGAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 10751 | 0.7 | 0.475858 |
Target: 5'- gCUGCCGGGcgaUCAUCaugUCGGGCgggUCAUCGa -3' miRNA: 3'- -GAUGGCCC---AGUGGa--AGCUCG---AGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 12042 | 0.7 | 0.475858 |
Target: 5'- -aACCGGuacUCACCgaggcCGAGCUCugCGg -3' miRNA: 3'- gaUGGCCc--AGUGGaa---GCUCGAGugGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 12137 | 0.68 | 0.631875 |
Target: 5'- -cACCGGGUCugCUUUcuugaUCACCGc -3' miRNA: 3'- gaUGGCCCAGugGAAGcucg-AGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 14175 | 0.69 | 0.564825 |
Target: 5'- -cGCCGGGcggguggcaaccgcUCACCccCGAGCagGCCGg -3' miRNA: 3'- gaUGGCCC--------------AGUGGaaGCUCGagUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 17337 | 0.69 | 0.567987 |
Target: 5'- gUGCCGGucaacGUCGCCgUCGAGgUCGgCGg -3' miRNA: 3'- gAUGGCC-----CAGUGGaAGCUCgAGUgGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 22987 | 0.66 | 0.737287 |
Target: 5'- --cCCGGuGUCgacGCCgcCGAGgUCACCGa -3' miRNA: 3'- gauGGCC-CAG---UGGaaGCUCgAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 27323 | 0.66 | 0.727024 |
Target: 5'- uUGCgCGGGUUGCCUcgguaGAGCauccaaUCGCCGu -3' miRNA: 3'- gAUG-GCCCAGUGGAag---CUCG------AGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 30157 | 0.66 | 0.747449 |
Target: 5'- -gACCGGGcCGCCUaCaGGC-CGCCa -3' miRNA: 3'- gaUGGCCCaGUGGAaGcUCGaGUGGc -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 30323 | 0.68 | 0.642574 |
Target: 5'- -cGCCGcGUCguACCUgacacgcagcaCGAGCUCACCGu -3' miRNA: 3'- gaUGGCcCAG--UGGAa----------GCUCGAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 31293 | 0.72 | 0.409621 |
Target: 5'- uUGCCcGGUCugCgcaaCGAGCUUGCCGa -3' miRNA: 3'- gAUGGcCCAGugGaa--GCUCGAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 31416 | 0.67 | 0.648989 |
Target: 5'- --cCCGaGGUCGCCgcugagcaacucgUUGAGC-CACCGg -3' miRNA: 3'- gauGGC-CCAGUGGa------------AGCUCGaGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 31796 | 0.67 | 0.653264 |
Target: 5'- -gACCGcGUCGUCaUCGAGCUCgACCGa -3' miRNA: 3'- gaUGGCcCAGUGGaAGCUCGAG-UGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 40024 | 0.66 | 0.757501 |
Target: 5'- -gACCGGGaCGugaugCUUUGAGgUCGCCGg -3' miRNA: 3'- gaUGGCCCaGUg----GAAGCUCgAGUGGC- -5' |
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23425 | 5' | -56.2 | NC_005259.1 | + | 43262 | 0.67 | 0.685185 |
Target: 5'- -cGCCGGGU-GCCUgaGAGUUgACCGc -3' miRNA: 3'- gaUGGCCCAgUGGAagCUCGAgUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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