miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23428 3' -56.2 NC_005259.1 + 55820 0.66 0.752182
Target:  5'- cUCGGGGUaggCCGccGCGUCcucgaCGCGUg -3'
miRNA:   3'- aAGCCCCAca-GGU--UGCAGuug--GCGCG- -5'
23428 3' -56.2 NC_005259.1 + 36952 0.66 0.752182
Target:  5'- -cCGGGGUG-CCcGCGagaccgccUCGGCC-CGCa -3'
miRNA:   3'- aaGCCCCACaGGuUGC--------AGUUGGcGCG- -5'
23428 3' -56.2 NC_005259.1 + 63440 0.66 0.742005
Target:  5'- cUCGGGcGagacaucgagGcCCAugGcCAACCGCGUg -3'
miRNA:   3'- aAGCCC-Ca---------CaGGUugCaGUUGGCGCG- -5'
23428 3' -56.2 NC_005259.1 + 32654 0.66 0.725506
Target:  5'- -cCGGGGUGgggaaaucgucggcaUCCGAcucgcaauCGUCGuaGCCGgGCg -3'
miRNA:   3'- aaGCCCCAC---------------AGGUU--------GCAGU--UGGCgCG- -5'
23428 3' -56.2 NC_005259.1 + 13422 0.66 0.721344
Target:  5'- -cCGGGGUcgCCGcCGg-GGCCGCGCu -3'
miRNA:   3'- aaGCCCCAcaGGUuGCagUUGGCGCG- -5'
23428 3' -56.2 NC_005259.1 + 68842 0.66 0.710881
Target:  5'- gUCGGugaGGUGggCCAucAUGUCGAcuugcCCGCGCc -3'
miRNA:   3'- aAGCC---CCACa-GGU--UGCAGUU-----GGCGCG- -5'
23428 3' -56.2 NC_005259.1 + 67423 0.66 0.710881
Target:  5'- aUCGGGGUG-CCGggcucACGcUUGAgCGCGUc -3'
miRNA:   3'- aAGCCCCACaGGU-----UGC-AGUUgGCGCG- -5'
23428 3' -56.2 NC_005259.1 + 45461 0.66 0.710881
Target:  5'- aUCGGGGUGcCgAACGg--GCCGaGCu -3'
miRNA:   3'- aAGCCCCACaGgUUGCaguUGGCgCG- -5'
23428 3' -56.2 NC_005259.1 + 738 0.66 0.710881
Target:  5'- -cCGGcGGUGccuacgCCGccggugccuaccGCGUCcACCGCGCc -3'
miRNA:   3'- aaGCC-CCACa-----GGU------------UGCAGuUGGCGCG- -5'
23428 3' -56.2 NC_005259.1 + 49220 0.66 0.700344
Target:  5'- -gCGGGGUuuacucgucGUCgGAC-UCGACCGCuGCc -3'
miRNA:   3'- aaGCCCCA---------CAGgUUGcAGUUGGCG-CG- -5'
23428 3' -56.2 NC_005259.1 + 46572 0.67 0.67909
Target:  5'- -------gGUCgCGGCGUCGACCGCGCc -3'
miRNA:   3'- aagccccaCAG-GUUGCAGUUGGCGCG- -5'
23428 3' -56.2 NC_005259.1 + 5560 0.67 0.668393
Target:  5'- -gUGGGGUGgugaCGGCGa-GACCGUGCc -3'
miRNA:   3'- aaGCCCCACag--GUUGCagUUGGCGCG- -5'
23428 3' -56.2 NC_005259.1 + 26983 0.67 0.66625
Target:  5'- cUCGGcGGUGUagacguUCGACGUUucggucuugaacGCCGCGCc -3'
miRNA:   3'- aAGCC-CCACA------GGUUGCAGu-----------UGGCGCG- -5'
23428 3' -56.2 NC_005259.1 + 68554 0.67 0.646913
Target:  5'- aUCGGGGUGguugagCCAACcgagGUgGACCuCGUa -3'
miRNA:   3'- aAGCCCCACa-----GGUUG----CAgUUGGcGCG- -5'
23428 3' -56.2 NC_005259.1 + 37066 0.67 0.646913
Target:  5'- -gCGGcGGUGUCC-ACGUCcacgcACCG-GCg -3'
miRNA:   3'- aaGCC-CCACAGGuUGCAGu----UGGCgCG- -5'
23428 3' -56.2 NC_005259.1 + 6349 0.67 0.646913
Target:  5'- -aCGGGGUG-CCGuacgugcgcACGUUGucGCCGgGCg -3'
miRNA:   3'- aaGCCCCACaGGU---------UGCAGU--UGGCgCG- -5'
23428 3' -56.2 NC_005259.1 + 909 0.67 0.636148
Target:  5'- --aGGuGGUGcCCGGCGaUCAccugcuGCUGCGCg -3'
miRNA:   3'- aagCC-CCACaGGUUGC-AGU------UGGCGCG- -5'
23428 3' -56.2 NC_005259.1 + 41412 0.67 0.636148
Target:  5'- cUCGGGGUGcCCAcgAUGUgCAcggGCCGC-Ca -3'
miRNA:   3'- aAGCCCCACaGGU--UGCA-GU---UGGCGcG- -5'
23428 3' -56.2 NC_005259.1 + 64234 0.68 0.593146
Target:  5'- aUCGGGGUcgauagCCGACGggaUCAACguggUGCGCg -3'
miRNA:   3'- aAGCCCCAca----GGUUGC---AGUUG----GCGCG- -5'
23428 3' -56.2 NC_005259.1 + 46533 0.69 0.550642
Target:  5'- gUCGGGGaucgCCGAgaucugguCGcCGACCGCGCc -3'
miRNA:   3'- aAGCCCCaca-GGUU--------GCaGUUGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.