miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23429 3' -53.1 NC_005259.1 + 57994 0.66 0.894774
Target:  5'- cCCGGUCgaGCCaGCGACCauguuGAGgAUCg -3'
miRNA:   3'- -GGCUAG--UGGcCGCUGGagu--UUCgUAG- -5'
23429 3' -53.1 NC_005259.1 + 9982 0.66 0.894774
Target:  5'- aCCGGUCgagguggccaGCCGGgGACUgauccGCGUCg -3'
miRNA:   3'- -GGCUAG----------UGGCCgCUGGaguuuCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 26768 0.66 0.894774
Target:  5'- aCCGAUgaugcCGCCGGUG-CCUCGGaacaccAGCGc- -3'
miRNA:   3'- -GGCUA-----GUGGCCGCuGGAGUU------UCGUag -5'
23429 3' -53.1 NC_005259.1 + 58392 0.66 0.894774
Target:  5'- aCGGUgcgcaccagcCACCGGCGGCgaUCAGAG-AUCc -3'
miRNA:   3'- gGCUA----------GUGGCCGCUGg-AGUUUCgUAG- -5'
23429 3' -53.1 NC_005259.1 + 6709 0.66 0.894774
Target:  5'- aCGAUCaACCGGCagcaGGCaCUCAuccgcAAGCAg- -3'
miRNA:   3'- gGCUAG-UGGCCG----CUG-GAGU-----UUCGUag -5'
23429 3' -53.1 NC_005259.1 + 27319 0.66 0.880154
Target:  5'- aUCGuugCGCgGGUuGCCUCGguaGAGCAUCc -3'
miRNA:   3'- -GGCua-GUGgCCGcUGGAGU---UUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 14033 0.66 0.880154
Target:  5'- aCGAUCAUCGaGCGGCagc---GCAUCg -3'
miRNA:   3'- gGCUAGUGGC-CGCUGgaguuuCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 31382 0.66 0.872464
Target:  5'- cCCGuagCAccCCGGUGACaUCGGAGCAc- -3'
miRNA:   3'- -GGCua-GU--GGCCGCUGgAGUUUCGUag -5'
23429 3' -53.1 NC_005259.1 + 8059 0.66 0.870108
Target:  5'- gCCGGUCGCCGcCGACaUCGAgaucgugccgcgcuGGCGUg -3'
miRNA:   3'- -GGCUAGUGGCcGCUGgAGUU--------------UCGUAg -5'
23429 3' -53.1 NC_005259.1 + 44798 0.66 0.864527
Target:  5'- aCGcUCGCCGGUGGCCU---GGCccuugGUCa -3'
miRNA:   3'- gGCuAGUGGCCGCUGGAguuUCG-----UAG- -5'
23429 3' -53.1 NC_005259.1 + 61786 0.67 0.85635
Target:  5'- uCUGcaCACCGGCGGCCUgAuAGCc-- -3'
miRNA:   3'- -GGCuaGUGGCCGCUGGAgUuUCGuag -5'
23429 3' -53.1 NC_005259.1 + 43674 0.67 0.855519
Target:  5'- gCCGAUCACaccgccgccggUGGCGAaCCUCuuGaaaccgcgcgaccGCAUCg -3'
miRNA:   3'- -GGCUAGUG-----------GCCGCU-GGAGuuU-------------CGUAG- -5'
23429 3' -53.1 NC_005259.1 + 51993 0.67 0.839308
Target:  5'- aCCGA-CGCCGaucuCGACCggaugCAcGAGCGUCa -3'
miRNA:   3'- -GGCUaGUGGCc---GCUGGa----GU-UUCGUAG- -5'
23429 3' -53.1 NC_005259.1 + 26126 0.67 0.839308
Target:  5'- gCCGGUCGCCGGUccgacGCCgcCGAGGCc-- -3'
miRNA:   3'- -GGCUAGUGGCCGc----UGGa-GUUUCGuag -5'
23429 3' -53.1 NC_005259.1 + 17809 0.67 0.839308
Target:  5'- gCGAg-GCCGGUGAgCUCAgcgAGGcCAUCg -3'
miRNA:   3'- gGCUagUGGCCGCUgGAGU---UUC-GUAG- -5'
23429 3' -53.1 NC_005259.1 + 7583 0.67 0.839308
Target:  5'- gCCGc-CGCCGcCGACCUCAAGGUc-- -3'
miRNA:   3'- -GGCuaGUGGCcGCUGGAGUUUCGuag -5'
23429 3' -53.1 NC_005259.1 + 63865 0.67 0.83046
Target:  5'- -aGGUgGCCGGCuGGCCUUgcguGGGCGUg -3'
miRNA:   3'- ggCUAgUGGCCG-CUGGAGu---UUCGUAg -5'
23429 3' -53.1 NC_005259.1 + 2015 0.67 0.821406
Target:  5'- aUCGGguggcgCACCGGC-ACCUCAGuGCGg- -3'
miRNA:   3'- -GGCUa-----GUGGCCGcUGGAGUUuCGUag -5'
23429 3' -53.1 NC_005259.1 + 13519 0.67 0.812155
Target:  5'- gUCGGUCACCGagacuGCGGCCaCcAAGCAguUCg -3'
miRNA:   3'- -GGCUAGUGGC-----CGCUGGaGuUUCGU--AG- -5'
23429 3' -53.1 NC_005259.1 + 59396 0.68 0.802716
Target:  5'- uCCGcgCGCgaGcGUGACCUCGcgcauGGCGUCg -3'
miRNA:   3'- -GGCuaGUGg-C-CGCUGGAGUu----UCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.