miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23435 5' -54.6 NC_005259.1 + 56764 0.67 0.770254
Target:  5'- uGGCCcaucGGgGacCGcUUGACACCGCCGUUGc -3'
miRNA:   3'- -CCGG----UCgCa-GC-AGUUGUGGCGGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 27054 0.67 0.770254
Target:  5'- uGGCCugAGCGaCGgucacggCGACAUCGCCGa-- -3'
miRNA:   3'- -CCGG--UCGCaGCa------GUUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 5716 0.67 0.770254
Target:  5'- aGGCCAGCGcCG--GACGgCgGCCAUUc -3'
miRNA:   3'- -CCGGUCGCaGCagUUGU-GgCGGUAAc -5'
23435 5' -54.6 NC_005259.1 + 4565 0.67 0.754111
Target:  5'- aGGUCAcGCcgaUCGUCGgcacguuccccgacaACACCGCCAUa- -3'
miRNA:   3'- -CCGGU-CGc--AGCAGU---------------UGUGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 40455 0.67 0.750025
Target:  5'- uGCCGGUGUgGUUGACguACUGCCGg-- -3'
miRNA:   3'- cCGGUCGCAgCAGUUG--UGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 35613 0.67 0.750025
Target:  5'- uGGCCAcgcuGCGUCGaguaguUCGGgcCGCCGCCGc-- -3'
miRNA:   3'- -CCGGU----CGCAGC------AGUU--GUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 32343 0.67 0.73973
Target:  5'- cGGCCAucaacGCGagGUUGAUgACCGCCGUg- -3'
miRNA:   3'- -CCGGU-----CGCagCAGUUG-UGGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 9516 0.67 0.729329
Target:  5'- cGUCGcGCG-CGUCGAcCGCCGCCGg-- -3'
miRNA:   3'- cCGGU-CGCaGCAGUU-GUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 61599 0.68 0.723042
Target:  5'- gGGCCGGUgggGUCGgCGgggaacagcagaccgGCACCGCCGa-- -3'
miRNA:   3'- -CCGGUCG---CAGCaGU---------------UGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 26239 0.68 0.697601
Target:  5'- gGGCCAGCGUCGUgAcCA-UGUCGUa- -3'
miRNA:   3'- -CCGGUCGCAGCAgUuGUgGCGGUAac -5'
23435 5' -54.6 NC_005259.1 + 46571 0.68 0.686887
Target:  5'- uGGUCgcGGCGUCGaCcGCGCCGCCc--- -3'
miRNA:   3'- -CCGG--UCGCAGCaGuUGUGGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 58297 0.68 0.686887
Target:  5'- aGGCCAGCG-----GAUACCGCCAcggUUGa -3'
miRNA:   3'- -CCGGUCGCagcagUUGUGGCGGU---AAC- -5'
23435 5' -54.6 NC_005259.1 + 43658 0.68 0.686887
Target:  5'- cGCCgacGGUGUCGUUGccgaucACACCGCCGc-- -3'
miRNA:   3'- cCGG---UCGCAGCAGU------UGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 56708 0.68 0.680433
Target:  5'- uGGCCAcgaugguguccccgaGCG-CGUCGACGuauCCGCCAc-- -3'
miRNA:   3'- -CCGGU---------------CGCaGCAGUUGU---GGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 8989 0.68 0.676122
Target:  5'- uGCCAGCGgCGaCGGCAgCCGCCu--- -3'
miRNA:   3'- cCGGUCGCaGCaGUUGU-GGCGGuaac -5'
23435 5' -54.6 NC_005259.1 + 44982 0.69 0.665316
Target:  5'- gGGCCGGUG-CGacugccgaGGCACCGCCGa-- -3'
miRNA:   3'- -CCGGUCGCaGCag------UUGUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 45306 0.69 0.65448
Target:  5'- cGCCGGUGaCGcCGAgGCCGCCGc-- -3'
miRNA:   3'- cCGGUCGCaGCaGUUgUGGCGGUaac -5'
23435 5' -54.6 NC_005259.1 + 67076 0.69 0.65448
Target:  5'- gGGCCAGCGU----GACGCCGaccuuggcCCAUUGg -3'
miRNA:   3'- -CCGGUCGCAgcagUUGUGGC--------GGUAAC- -5'
23435 5' -54.6 NC_005259.1 + 36021 0.69 0.643623
Target:  5'- uGGCCAGCGagGUCGACAUgaucagcgagGCCAc-- -3'
miRNA:   3'- -CCGGUCGCagCAGUUGUGg---------CGGUaac -5'
23435 5' -54.6 NC_005259.1 + 3679 0.69 0.632757
Target:  5'- aGCCAGa-UCGUCAcCGCCGCCc--- -3'
miRNA:   3'- cCGGUCgcAGCAGUuGUGGCGGuaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.