miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23443 5' -54.7 NC_005259.1 + 68864 0.68 0.701431
Target:  5'- uCGACuuGC-CCGCGcCGGGCGCGCcgaugagguagaugaGGCg -3'
miRNA:   3'- -GUUGu-CGuGGCGCuGCUCGUGUG---------------UCG- -5'
23443 5' -54.7 NC_005259.1 + 67978 0.69 0.63965
Target:  5'- gCAGCGGCguggccACCGCcGCGAGCGucgacuugcccuccUGCGGCg -3'
miRNA:   3'- -GUUGUCG------UGGCGcUGCUCGU--------------GUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 67799 0.72 0.433856
Target:  5'- ---uGGCACCGCGuGCGAGC-UugAGCc -3'
miRNA:   3'- guugUCGUGGCGC-UGCUCGuGugUCG- -5'
23443 5' -54.7 NC_005259.1 + 66260 0.71 0.524334
Target:  5'- -cGCGGC-CCGCGcCGGGCG-GCGGCu -3'
miRNA:   3'- guUGUCGuGGCGCuGCUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 65340 0.67 0.739464
Target:  5'- gAGCuGCugUGCG-CGGGCACgucGCAGg -3'
miRNA:   3'- gUUGuCGugGCGCuGCUCGUG---UGUCg -5'
23443 5' -54.7 NC_005259.1 + 64911 0.68 0.697142
Target:  5'- gCGACGGCGagCGUgaggauGACGAGUGC-CAGCg -3'
miRNA:   3'- -GUUGUCGUg-GCG------CUGCUCGUGuGUCG- -5'
23443 5' -54.7 NC_005259.1 + 64756 0.67 0.76003
Target:  5'- -cACcGCGCCucGCGACGGuGCGCcuCGGCg -3'
miRNA:   3'- guUGuCGUGG--CGCUGCU-CGUGu-GUCG- -5'
23443 5' -54.7 NC_005259.1 + 64613 0.8 0.150937
Target:  5'- uGACGGCGagCGCGACGGGCA-GCAGCg -3'
miRNA:   3'- gUUGUCGUg-GCGCUGCUCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 64005 0.7 0.577628
Target:  5'- uGACGGCauaccACCGCGccCGAG-GCGCGGCg -3'
miRNA:   3'- gUUGUCG-----UGGCGCu-GCUCgUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 63739 0.69 0.621097
Target:  5'- gUAGCGaCAUCuCGGCGGGCACgaACAGCa -3'
miRNA:   3'- -GUUGUcGUGGcGCUGCUCGUG--UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 63555 0.69 0.630919
Target:  5'- uCGGCGGcCACCgacGCGACGAGCgggauauACGCcGCc -3'
miRNA:   3'- -GUUGUC-GUGG---CGCUGCUCG-------UGUGuCG- -5'
23443 5' -54.7 NC_005259.1 + 63049 0.72 0.463059
Target:  5'- aCAGCAGCggugcguacAUCGCGAUGAGCuCAgGGUu -3'
miRNA:   3'- -GUUGUCG---------UGGCGCUGCUCGuGUgUCG- -5'
23443 5' -54.7 NC_005259.1 + 62827 0.72 0.463059
Target:  5'- -cGCuuGC-CCGCGAgguCGAGCGCGCGGUu -3'
miRNA:   3'- guUGu-CGuGGCGCU---GCUCGUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 62617 0.68 0.675566
Target:  5'- uGACGccGCACCGUGGCcAGCACcGCAuuGCg -3'
miRNA:   3'- gUUGU--CGUGGCGCUGcUCGUG-UGU--CG- -5'
23443 5' -54.7 NC_005259.1 + 62416 0.67 0.718471
Target:  5'- -cACGGCACC-CGuauCGGGUggagguucggACGCAGCa -3'
miRNA:   3'- guUGUCGUGGcGCu--GCUCG----------UGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 60612 0.69 0.621097
Target:  5'- gAGCAGCACagGCGGCGAgguguggaacuGCGCGUAGUu -3'
miRNA:   3'- gUUGUCGUGg-CGCUGCU-----------CGUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 59311 0.68 0.653827
Target:  5'- uGGCGGCA--GCGGCGAGCu--CAGCc -3'
miRNA:   3'- gUUGUCGUggCGCUGCUCGuguGUCG- -5'
23443 5' -54.7 NC_005259.1 + 59113 0.66 0.774126
Target:  5'- --uCAGCACgCGCGGCaucgagcagagcgucGAGCucgGCAGCg -3'
miRNA:   3'- guuGUCGUG-GCGCUG---------------CUCGug-UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 58918 0.69 0.642924
Target:  5'- uCGGCGGUcuugUCGuCGGCGGGCGCggugGCAGCg -3'
miRNA:   3'- -GUUGUCGu---GGC-GCUGCUCGUG----UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 56998 0.7 0.53486
Target:  5'- gAGCuGC-CCGUG-CGAGCACcuCAGCg -3'
miRNA:   3'- gUUGuCGuGGCGCuGCUCGUGu-GUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.