miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2345 5' -58.5 NC_001416.1 + 12721 1.13 0.000201
Target:  5'- gCCGCCACCAACAGCCCCGCCAAUGGCg -3'
miRNA:   3'- -GGCGGUGGUUGUCGGGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 5979 0.77 0.101919
Target:  5'- aCCGCaagaauGCCAACGGCagcaCCGUCGGUGGUg -3'
miRNA:   3'- -GGCGg-----UGGUUGUCGg---GGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 5896 0.75 0.134422
Target:  5'- gCaCCACCGACGGUgCUGCCGuUGGCa -3'
miRNA:   3'- gGcGGUGGUUGUCGgGGCGGUuACCG- -5'
2345 5' -58.5 NC_001416.1 + 20087 0.74 0.154044
Target:  5'- gCGCCGCCAGCAcgUCCGCCGGacaGGCu -3'
miRNA:   3'- gGCGGUGGUUGUcgGGGCGGUUa--CCG- -5'
2345 5' -58.5 NC_001416.1 + 1090 0.73 0.180993
Target:  5'- gUCGCUGCUGGCgcuGGCCCCGUgGuAUGGCa -3'
miRNA:   3'- -GGCGGUGGUUG---UCGGGGCGgU-UACCG- -5'
2345 5' -58.5 NC_001416.1 + 4876 0.73 0.180993
Target:  5'- cCCGCCACCA----UCCCGCCg--GGCg -3'
miRNA:   3'- -GGCGGUGGUugucGGGGCGGuuaCCG- -5'
2345 5' -58.5 NC_001416.1 + 12943 0.73 0.185872
Target:  5'- gCUGCCcgguguACCGACAuaaCCGCCGGUGGCa -3'
miRNA:   3'- -GGCGG------UGGUUGUcggGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 15110 0.72 0.206561
Target:  5'- aCGCCACCuGACuuGGCCCCGgCGAcucUGGg -3'
miRNA:   3'- gGCGGUGG-UUG--UCGGGGCgGUU---ACCg -5'
2345 5' -58.5 NC_001416.1 + 14416 0.72 0.229211
Target:  5'- -aGCCGCCGGuCGGCCUCacucaGCCAG-GGCa -3'
miRNA:   3'- ggCGGUGGUU-GUCGGGG-----CGGUUaCCG- -5'
2345 5' -58.5 NC_001416.1 + 17957 0.71 0.256514
Target:  5'- cUCGCCcgACCGACGGCCUCcacgaaugccgauuuGCCAAcGGUg -3'
miRNA:   3'- -GGCGG--UGGUUGUCGGGG---------------CGGUUaCCG- -5'
2345 5' -58.5 NC_001416.1 + 33394 0.71 0.260437
Target:  5'- -aGCCAgCAACAGgccaCCCUGC-AAUGGCa -3'
miRNA:   3'- ggCGGUgGUUGUC----GGGGCGgUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 652 0.7 0.295043
Target:  5'- gCCGCugCACCGACAGggggagCCCGUCGAgaauacUGGCa -3'
miRNA:   3'- -GGCG--GUGGUUGUCg-----GGGCGGUU------ACCG- -5'
2345 5' -58.5 NC_001416.1 + 10985 0.7 0.30238
Target:  5'- gCCaGCgCACCggUcGCCaCCGCCAgcgagGUGGCc -3'
miRNA:   3'- -GG-CG-GUGGuuGuCGG-GGCGGU-----UACCG- -5'
2345 5' -58.5 NC_001416.1 + 15117 0.7 0.315173
Target:  5'- -aGCCACCcuugcagcauggggGGCAGCCauugggGCCGGUGGUa -3'
miRNA:   3'- ggCGGUGG--------------UUGUCGGgg----CGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 9933 0.7 0.317473
Target:  5'- aUCGCCACCAGaaacGCgCCGguuCUGAUGGCg -3'
miRNA:   3'- -GGCGGUGGUUgu--CGgGGC---GGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 46238 0.69 0.341162
Target:  5'- aCCGCCuCCGgcguggauaauGCAGCCUCcccCCGAcUGGCa -3'
miRNA:   3'- -GGCGGuGGU-----------UGUCGGGGc--GGUU-ACCG- -5'
2345 5' -58.5 NC_001416.1 + 11905 0.69 0.349337
Target:  5'- gCCGCCGCCAuCAGCguguuguaaUCCGCCu---GCa -3'
miRNA:   3'- -GGCGGUGGUuGUCG---------GGGCGGuuacCG- -5'
2345 5' -58.5 NC_001416.1 + 5835 0.69 0.349338
Target:  5'- gCGCCugCAAUGaCCCCGCUGAUG-Cu -3'
miRNA:   3'- gGCGGugGUUGUcGGGGCGGUUACcG- -5'
2345 5' -58.5 NC_001416.1 + 18050 0.69 0.357652
Target:  5'- uCCGUCAgcucgacuuuuuCCAGCAGCUCCuuGCCGAgaUGGg -3'
miRNA:   3'- -GGCGGU------------GGUUGUCGGGG--CGGUU--ACCg -5'
2345 5' -58.5 NC_001416.1 + 6073 0.69 0.357652
Target:  5'- cUCGUCGCUGGCAGCCuCCgGCCAGa-GCa -3'
miRNA:   3'- -GGCGGUGGUUGUCGG-GG-CGGUUacCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.