miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2345 5' -58.5 NC_001416.1 + 5896 0.75 0.134422
Target:  5'- gCaCCACCGACGGUgCUGCCGuUGGCa -3'
miRNA:   3'- gGcGGUGGUUGUCGgGGCGGUuACCG- -5'
2345 5' -58.5 NC_001416.1 + 17621 0.68 0.401263
Target:  5'- gCCG-CACCGGCAGCaCCGUCGA-GGa -3'
miRNA:   3'- -GGCgGUGGUUGUCGgGGCGGUUaCCg -5'
2345 5' -58.5 NC_001416.1 + 9371 0.69 0.366103
Target:  5'- -aGUCACCAAUgugGGacgUCCGUCGAUGGCa -3'
miRNA:   3'- ggCGGUGGUUG---UCg--GGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 15572 0.69 0.361016
Target:  5'- aUGCCAUCAGCgaagggccgauugaaGGUCCgGUgGAUGGCu -3'
miRNA:   3'- gGCGGUGGUUG---------------UCGGGgCGgUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 46238 0.69 0.341162
Target:  5'- aCCGCCuCCGgcguggauaauGCAGCCUCcccCCGAcUGGCa -3'
miRNA:   3'- -GGCGGuGGU-----------UGUCGGGGc--GGUU-ACCG- -5'
2345 5' -58.5 NC_001416.1 + 15117 0.7 0.315173
Target:  5'- -aGCCACCcuugcagcauggggGGCAGCCauugggGCCGGUGGUa -3'
miRNA:   3'- ggCGGUGG--------------UUGUCGGgg----CGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 14310 0.66 0.528831
Target:  5'- gCGCUgguCCA-CAGCCaCC-CCGGUGGUc -3'
miRNA:   3'- gGCGGu--GGUuGUCGG-GGcGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 4748 0.66 0.487686
Target:  5'- cCCGUCugCAACAggcuGCCagCGauCCGAUGGUg -3'
miRNA:   3'- -GGCGGugGUUGU----CGGg-GC--GGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 7630 0.68 0.392274
Target:  5'- aUGCUGCCAuu-GCCCgCGCCGAUGa- -3'
miRNA:   3'- gGCGGUGGUuguCGGG-GCGGUUACcg -5'
2345 5' -58.5 NC_001416.1 + 5835 0.69 0.349338
Target:  5'- gCGCCugCAAUGaCCCCGCUGAUG-Cu -3'
miRNA:   3'- gGCGGugGUUGUcGGGGCGGUUACcG- -5'
2345 5' -58.5 NC_001416.1 + 20087 0.74 0.154044
Target:  5'- gCGCCGCCAGCAcgUCCGCCGGacaGGCu -3'
miRNA:   3'- gGCGGUGGUUGUcgGGGCGGUUa--CCG- -5'
2345 5' -58.5 NC_001416.1 + 21209 0.66 0.497837
Target:  5'- uCgGCCuuuCCGGCAGgUgCGCCGaucccGUGGCc -3'
miRNA:   3'- -GgCGGu--GGUUGUCgGgGCGGU-----UACCG- -5'
2345 5' -58.5 NC_001416.1 + 1090 0.73 0.180993
Target:  5'- gUCGCUGCUGGCgcuGGCCCCGUgGuAUGGCa -3'
miRNA:   3'- -GGCGGUGGUUG---UCGGGGCGgU-UACCG- -5'
2345 5' -58.5 NC_001416.1 + 45642 0.68 0.374692
Target:  5'- aCGCUACCAGCuucuuUCCCGUUggUGGg -3'
miRNA:   3'- gGCGGUGGUUGuc---GGGGCGGuuACCg -5'
2345 5' -58.5 NC_001416.1 + 10872 0.66 0.518415
Target:  5'- uUGCCGgugCGAUcaCCCUGCCGAUGGUg -3'
miRNA:   3'- gGCGGUg--GUUGucGGGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 33394 0.71 0.260437
Target:  5'- -aGCCAgCAACAGgccaCCCUGC-AAUGGCa -3'
miRNA:   3'- ggCGGUgGUUGUC----GGGGCGgUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 12862 0.67 0.429004
Target:  5'- aUGCCACCGGCGGUuaugucgguacaCCgGgCAgcAUGGCa -3'
miRNA:   3'- gGCGGUGGUUGUCG------------GGgCgGU--UACCG- -5'
2345 5' -58.5 NC_001416.1 + 8500 0.69 0.366103
Target:  5'- aCGCCGuggUCAGCGGCaCCGCCAucgGGa -3'
miRNA:   3'- gGCGGU---GGUUGUCGgGGCGGUua-CCg -5'
2345 5' -58.5 NC_001416.1 + 15659 0.68 0.383416
Target:  5'- gCCauCCACCGGaccuucaauCGGCCCuuCGCUGAUGGCa -3'
miRNA:   3'- -GGc-GGUGGUU---------GUCGGG--GCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 7579 0.68 0.407634
Target:  5'- aCGCCGuucCCGGCAGCaCaaaUGCCAcagguucaucccgcGUGGCg -3'
miRNA:   3'- gGCGGU---GGUUGUCG-Gg--GCGGU--------------UACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.