Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2345 | 5' | -58.5 | NC_001416.1 | + | 652 | 0.7 | 0.295043 |
Target: 5'- gCCGCugCACCGACAGggggagCCCGUCGAgaauacUGGCa -3' miRNA: 3'- -GGCG--GUGGUUGUCg-----GGGCGGUU------ACCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 1090 | 0.73 | 0.180993 |
Target: 5'- gUCGCUGCUGGCgcuGGCCCCGUgGuAUGGCa -3' miRNA: 3'- -GGCGGUGGUUG---UCGGGGCGgU-UACCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 2256 | 0.66 | 0.498857 |
Target: 5'- -gGCCACCGGCuuuccguagacggauGCCCCuuUAAUGGg -3' miRNA: 3'- ggCGGUGGUUGu--------------CGGGGcgGUUACCg -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 4748 | 0.66 | 0.487686 |
Target: 5'- cCCGUCugCAACAggcuGCCagCGauCCGAUGGUg -3' miRNA: 3'- -GGCGGugGUUGU----CGGg-GC--GGUUACCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 4835 | 0.66 | 0.487686 |
Target: 5'- gCCGuCCACCAucggaucgcugGCAGCCUguUGCagAcgGGCg -3' miRNA: 3'- -GGC-GGUGGU-----------UGUCGGG--GCGg-UuaCCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 4876 | 0.73 | 0.180993 |
Target: 5'- cCCGCCACCA----UCCCGCCg--GGCg -3' miRNA: 3'- -GGCGGUGGUugucGGGGCGGuuaCCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 5057 | 0.66 | 0.487686 |
Target: 5'- aCCGUaauUACUGugAGCCaucaugaCGCCGAUGGa -3' miRNA: 3'- -GGCG---GUGGUugUCGGg------GCGGUUACCg -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 5835 | 0.69 | 0.349338 |
Target: 5'- gCGCCugCAAUGaCCCCGCUGAUG-Cu -3' miRNA: 3'- gGCGGugGUUGUcGGGGCGGUUACcG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 5896 | 0.75 | 0.134422 |
Target: 5'- gCaCCACCGACGGUgCUGCCGuUGGCa -3' miRNA: 3'- gGcGGUGGUUGUCGgGGCGGUuACCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 5979 | 0.77 | 0.101919 |
Target: 5'- aCCGCaagaauGCCAACGGCagcaCCGUCGGUGGUg -3' miRNA: 3'- -GGCGg-----UGGUUGUCGg---GGCGGUUACCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 6073 | 0.69 | 0.357652 |
Target: 5'- cUCGUCGCUGGCAGCCuCCgGCCAGa-GCa -3' miRNA: 3'- -GGCGGUGGUUGUCGG-GG-CGGUUacCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 7579 | 0.68 | 0.407634 |
Target: 5'- aCGCCGuucCCGGCAGCaCaaaUGCCAcagguucaucccgcGUGGCg -3' miRNA: 3'- gGCGGU---GGUUGUCG-Gg--GCGGU--------------UACCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 7630 | 0.68 | 0.392274 |
Target: 5'- aUGCUGCCAuu-GCCCgCGCCGAUGa- -3' miRNA: 3'- gGCGGUGGUuguCGGG-GCGGUUACcg -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 8346 | 0.67 | 0.471651 |
Target: 5'- gCCGCCACCuuucagggaugaacGCuGCCCCuuuuuacgacGCCugcGGCg -3' miRNA: 3'- -GGCGGUGGu-------------UGuCGGGG----------CGGuuaCCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 8500 | 0.69 | 0.366103 |
Target: 5'- aCGCCGuggUCAGCGGCaCCGCCAucgGGa -3' miRNA: 3'- gGCGGU---GGUUGUCGgGGCGGUua-CCg -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 9288 | 0.67 | 0.448112 |
Target: 5'- aCGCCAgCAGCGccugcuGCCCCuGCUcuccgGGCa -3' miRNA: 3'- gGCGGUgGUUGU------CGGGG-CGGuua--CCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 9371 | 0.69 | 0.366103 |
Target: 5'- -aGUCACCAAUgugGGacgUCCGUCGAUGGCa -3' miRNA: 3'- ggCGGUGGUUG---UCg--GGGCGGUUACCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 9933 | 0.7 | 0.317473 |
Target: 5'- aUCGCCACCAGaaacGCgCCGguuCUGAUGGCg -3' miRNA: 3'- -GGCGGUGGUUgu--CGgGGC---GGUUACCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 10872 | 0.66 | 0.518415 |
Target: 5'- uUGCCGgugCGAUcaCCCUGCCGAUGGUg -3' miRNA: 3'- gGCGGUg--GUUGucGGGGCGGUUACCG- -5' |
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2345 | 5' | -58.5 | NC_001416.1 | + | 10985 | 0.7 | 0.30238 |
Target: 5'- gCCaGCgCACCggUcGCCaCCGCCAgcgagGUGGCc -3' miRNA: 3'- -GG-CG-GUGGuuGuCGG-GGCGGU-----UACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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