miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2345 5' -58.5 NC_001416.1 + 11905 0.69 0.349337
Target:  5'- gCCGCCGCCAuCAGCguguuguaaUCCGCCu---GCa -3'
miRNA:   3'- -GGCGGUGGUuGUCG---------GGGCGGuuacCG- -5'
2345 5' -58.5 NC_001416.1 + 12220 0.67 0.448112
Target:  5'- uUGUCGCCAAguGCa--GCCAGcUGGCg -3'
miRNA:   3'- gGCGGUGGUUguCGgggCGGUU-ACCG- -5'
2345 5' -58.5 NC_001416.1 + 12343 0.67 0.448112
Target:  5'- uCUGCCuGCCGGucaguCAGCCCCcgGCUuuucgcaucAAUGGCg -3'
miRNA:   3'- -GGCGG-UGGUU-----GUCGGGG--CGG---------UUACCG- -5'
2345 5' -58.5 NC_001416.1 + 12721 1.13 0.000201
Target:  5'- gCCGCCACCAACAGCCCCGCCAAUGGCg -3'
miRNA:   3'- -GGCGGUGGUUGUCGGGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 12862 0.67 0.429004
Target:  5'- aUGCCACCGGCGGUuaugucgguacaCCgGgCAgcAUGGCa -3'
miRNA:   3'- gGCGGUGGUUGUCG------------GGgCgGU--UACCG- -5'
2345 5' -58.5 NC_001416.1 + 12943 0.73 0.185872
Target:  5'- gCUGCCcgguguACCGACAuaaCCGCCGGUGGCa -3'
miRNA:   3'- -GGCGG------UGGUUGUcggGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 13525 0.66 0.508082
Target:  5'- aCGCUgGCCGACuGCUCCGCacg-GGUg -3'
miRNA:   3'- gGCGG-UGGUUGuCGGGGCGguuaCCG- -5'
2345 5' -58.5 NC_001416.1 + 14310 0.66 0.528831
Target:  5'- gCGCUgguCCA-CAGCCaCC-CCGGUGGUc -3'
miRNA:   3'- gGCGGu--GGUuGUCGG-GGcGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 14416 0.72 0.229211
Target:  5'- -aGCCGCCGGuCGGCCUCacucaGCCAG-GGCa -3'
miRNA:   3'- ggCGGUGGUU-GUCGGGG-----CGGUUaCCG- -5'
2345 5' -58.5 NC_001416.1 + 14663 0.67 0.429004
Target:  5'- aCGgCACCugauACAGCCCCGUCGc---- -3'
miRNA:   3'- gGCgGUGGu---UGUCGGGGCGGUuaccg -5'
2345 5' -58.5 NC_001416.1 + 15110 0.72 0.206561
Target:  5'- aCGCCACCuGACuuGGCCCCGgCGAcucUGGg -3'
miRNA:   3'- gGCGGUGG-UUG--UCGGGGCgGUU---ACCg -5'
2345 5' -58.5 NC_001416.1 + 15117 0.7 0.315173
Target:  5'- -aGCCACCcuugcagcauggggGGCAGCCauugggGCCGGUGGUa -3'
miRNA:   3'- ggCGGUGG--------------UUGUCGGgg----CGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 15572 0.69 0.361016
Target:  5'- aUGCCAUCAGCgaagggccgauugaaGGUCCgGUgGAUGGCu -3'
miRNA:   3'- gGCGGUGGUUG---------------UCGGGgCGgUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 15659 0.68 0.383416
Target:  5'- gCCauCCACCGGaccuucaauCGGCCCuuCGCUGAUGGCa -3'
miRNA:   3'- -GGc-GGUGGUU---------GUCGGG--GCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 17359 0.68 0.410383
Target:  5'- uUCGCCGUCAAagugcGCCCCGUuauccaCGAUGGCc -3'
miRNA:   3'- -GGCGGUGGUUgu---CGGGGCG------GUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 17621 0.68 0.401263
Target:  5'- gCCG-CACCGGCAGCaCCGUCGA-GGa -3'
miRNA:   3'- -GGCgGUGGUUGUCGgGGCGGUUaCCg -5'
2345 5' -58.5 NC_001416.1 + 17957 0.71 0.256514
Target:  5'- cUCGCCcgACCGACGGCCUCcacgaaugccgauuuGCCAAcGGUg -3'
miRNA:   3'- -GGCGG--UGGUUGUCGGGG---------------CGGUUaCCG- -5'
2345 5' -58.5 NC_001416.1 + 18050 0.69 0.357652
Target:  5'- uCCGUCAgcucgacuuuuuCCAGCAGCUCCuuGCCGAgaUGGg -3'
miRNA:   3'- -GGCGGU------------GGUUGUCGGGG--CGGUU--ACCg -5'
2345 5' -58.5 NC_001416.1 + 19392 0.67 0.457842
Target:  5'- gCCGgaCCACCGACugugAGCCacuCCGgCC-AUGGCg -3'
miRNA:   3'- -GGC--GGUGGUUG----UCGG---GGC-GGuUACCG- -5'
2345 5' -58.5 NC_001416.1 + 20087 0.74 0.154044
Target:  5'- gCGCCGCCAGCAcgUCCGCCGGacaGGCu -3'
miRNA:   3'- gGCGGUGGUUGUcgGGGCGGUUa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.