miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2345 5' -58.5 NC_001416.1 + 12943 0.73 0.185872
Target:  5'- gCUGCCcgguguACCGACAuaaCCGCCGGUGGCa -3'
miRNA:   3'- -GGCGG------UGGUUGUcggGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 12862 0.67 0.429004
Target:  5'- aUGCCACCGGCGGUuaugucgguacaCCgGgCAgcAUGGCa -3'
miRNA:   3'- gGCGGUGGUUGUCG------------GGgCgGU--UACCG- -5'
2345 5' -58.5 NC_001416.1 + 12721 1.13 0.000201
Target:  5'- gCCGCCACCAACAGCCCCGCCAAUGGCg -3'
miRNA:   3'- -GGCGGUGGUUGUCGGGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 12343 0.67 0.448112
Target:  5'- uCUGCCuGCCGGucaguCAGCCCCcgGCUuuucgcaucAAUGGCg -3'
miRNA:   3'- -GGCGG-UGGUU-----GUCGGGG--CGG---------UUACCG- -5'
2345 5' -58.5 NC_001416.1 + 12220 0.67 0.448112
Target:  5'- uUGUCGCCAAguGCa--GCCAGcUGGCg -3'
miRNA:   3'- gGCGGUGGUUguCGgggCGGUU-ACCG- -5'
2345 5' -58.5 NC_001416.1 + 11905 0.69 0.349337
Target:  5'- gCCGCCGCCAuCAGCguguuguaaUCCGCCu---GCa -3'
miRNA:   3'- -GGCGGUGGUuGUCG---------GGGCGGuuacCG- -5'
2345 5' -58.5 NC_001416.1 + 10985 0.7 0.30238
Target:  5'- gCCaGCgCACCggUcGCCaCCGCCAgcgagGUGGCc -3'
miRNA:   3'- -GG-CG-GUGGuuGuCGG-GGCGGU-----UACCG- -5'
2345 5' -58.5 NC_001416.1 + 10872 0.66 0.518415
Target:  5'- uUGCCGgugCGAUcaCCCUGCCGAUGGUg -3'
miRNA:   3'- gGCGGUg--GUUGucGGGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 9933 0.7 0.317473
Target:  5'- aUCGCCACCAGaaacGCgCCGguuCUGAUGGCg -3'
miRNA:   3'- -GGCGGUGGUUgu--CGgGGC---GGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 9371 0.69 0.366103
Target:  5'- -aGUCACCAAUgugGGacgUCCGUCGAUGGCa -3'
miRNA:   3'- ggCGGUGGUUG---UCg--GGGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 9288 0.67 0.448112
Target:  5'- aCGCCAgCAGCGccugcuGCCCCuGCUcuccgGGCa -3'
miRNA:   3'- gGCGGUgGUUGU------CGGGG-CGGuua--CCG- -5'
2345 5' -58.5 NC_001416.1 + 8500 0.69 0.366103
Target:  5'- aCGCCGuggUCAGCGGCaCCGCCAucgGGa -3'
miRNA:   3'- gGCGGU---GGUUGUCGgGGCGGUua-CCg -5'
2345 5' -58.5 NC_001416.1 + 8346 0.67 0.471651
Target:  5'- gCCGCCACCuuucagggaugaacGCuGCCCCuuuuuacgacGCCugcGGCg -3'
miRNA:   3'- -GGCGGUGGu-------------UGuCGGGG----------CGGuuaCCG- -5'
2345 5' -58.5 NC_001416.1 + 7630 0.68 0.392274
Target:  5'- aUGCUGCCAuu-GCCCgCGCCGAUGa- -3'
miRNA:   3'- gGCGGUGGUuguCGGG-GCGGUUACcg -5'
2345 5' -58.5 NC_001416.1 + 7579 0.68 0.407634
Target:  5'- aCGCCGuucCCGGCAGCaCaaaUGCCAcagguucaucccgcGUGGCg -3'
miRNA:   3'- gGCGGU---GGUUGUCG-Gg--GCGGU--------------UACCG- -5'
2345 5' -58.5 NC_001416.1 + 6073 0.69 0.357652
Target:  5'- cUCGUCGCUGGCAGCCuCCgGCCAGa-GCa -3'
miRNA:   3'- -GGCGGUGGUUGUCGG-GG-CGGUUacCG- -5'
2345 5' -58.5 NC_001416.1 + 5979 0.77 0.101919
Target:  5'- aCCGCaagaauGCCAACGGCagcaCCGUCGGUGGUg -3'
miRNA:   3'- -GGCGg-----UGGUUGUCGg---GGCGGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 5896 0.75 0.134422
Target:  5'- gCaCCACCGACGGUgCUGCCGuUGGCa -3'
miRNA:   3'- gGcGGUGGUUGUCGgGGCGGUuACCG- -5'
2345 5' -58.5 NC_001416.1 + 5835 0.69 0.349338
Target:  5'- gCGCCugCAAUGaCCCCGCUGAUG-Cu -3'
miRNA:   3'- gGCGGugGUUGUcGGGGCGGUUACcG- -5'
2345 5' -58.5 NC_001416.1 + 5057 0.66 0.487686
Target:  5'- aCCGUaauUACUGugAGCCaucaugaCGCCGAUGGa -3'
miRNA:   3'- -GGCG---GUGGUugUCGGg------GCGGUUACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.