miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23453 5' -56.9 NC_005259.1 + 35815 0.77 0.167874
Target:  5'- cGGUGCC---GUACGAccccgcauagccGCCACCGCCCGc -3'
miRNA:   3'- -UCACGGucaCAUGCU------------UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 26779 0.76 0.212433
Target:  5'- --cGCCGGUGccuCGGaacaccagcGCCGCCGCCCGg -3'
miRNA:   3'- ucaCGGUCACau-GCU---------UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 56135 0.73 0.301584
Target:  5'- -cUGCCGGUGUA--AACCugCGUCCGg -3'
miRNA:   3'- ucACGGUCACAUgcUUGGugGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 35186 0.72 0.339773
Target:  5'- cGUGCCGGUGaGCaGcACCguGCCGCCUGa -3'
miRNA:   3'- uCACGGUCACaUG-CuUGG--UGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 39611 0.71 0.381347
Target:  5'- uGGUGCCAucagcgacgGUGUACG---CGCUGCCCGg -3'
miRNA:   3'- -UCACGGU---------CACAUGCuugGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 14303 0.71 0.39006
Target:  5'- -aUGUCGGUgcGUAUGGccgcccucgacGCCGCCGCCCGc -3'
miRNA:   3'- ucACGGUCA--CAUGCU-----------UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 11115 0.71 0.39006
Target:  5'- uGGUGCgaCGGUgacgGUGCGAGCCGUCGCCUGc -3'
miRNA:   3'- -UCACG--GUCA----CAUGCUUGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 27480 0.71 0.398902
Target:  5'- cGGgGUCGGUGUG---GCCACCGCCCc -3'
miRNA:   3'- -UCaCGGUCACAUgcuUGGUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 29859 0.71 0.40787
Target:  5'- -cUGUCGGgcauCGAacuGCCACCGCCCGa -3'
miRNA:   3'- ucACGGUCacauGCU---UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 37353 0.71 0.420636
Target:  5'- gGGuUGCCGcUGUGCGAguagcucacgcccucGgCACCGCCCGc -3'
miRNA:   3'- -UC-ACGGUcACAUGCU---------------UgGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 45306 0.71 0.426181
Target:  5'- --cGCCGGUG-ACGccgaGGCCGCCGCCg- -3'
miRNA:   3'- ucaCGGUCACaUGC----UUGGUGGCGGgc -5'
23453 5' -56.9 NC_005259.1 + 10823 0.7 0.435517
Target:  5'- cGGUGCCGaUGgacACGc-CCACCGCCUGa -3'
miRNA:   3'- -UCACGGUcACa--UGCuuGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 33463 0.7 0.454539
Target:  5'- cGUGCCgGGUGUcUGGACUGCCGCaCGg -3'
miRNA:   3'- uCACGG-UCACAuGCUUGGUGGCGgGC- -5'
23453 5' -56.9 NC_005259.1 + 41416 0.7 0.464217
Target:  5'- gGGUGCCcacgauGUGcACGGGCCGCCauuugcGCCCc -3'
miRNA:   3'- -UCACGGu-----CACaUGCUUGGUGG------CGGGc -5'
23453 5' -56.9 NC_005259.1 + 45648 0.69 0.483887
Target:  5'- cGGUGCCGccGUGaAC--ACCGCCGUCCGc -3'
miRNA:   3'- -UCACGGU--CACaUGcuUGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 22983 0.69 0.50395
Target:  5'- cGUGcCCGGUGU-CGAcGCCGCCGaggucaCCGa -3'
miRNA:   3'- uCAC-GGUCACAuGCU-UGGUGGCg-----GGC- -5'
23453 5' -56.9 NC_005259.1 + 43688 0.69 0.513095
Target:  5'- --cGCCGGUG-GCGAACCucuugaaACCGCgCGa -3'
miRNA:   3'- ucaCGGUCACaUGCUUGG-------UGGCGgGC- -5'
23453 5' -56.9 NC_005259.1 + 34626 0.69 0.514115
Target:  5'- uGUGCCAGacgaUGggcGCGGACCACacuaGCCgGa -3'
miRNA:   3'- uCACGGUC----ACa--UGCUUGGUGg---CGGgC- -5'
23453 5' -56.9 NC_005259.1 + 7249 0.69 0.521281
Target:  5'- --cGCCGGUGUcgaguGCGccaagaaacugcucGGCUACCGCCCc -3'
miRNA:   3'- ucaCGGUCACA-----UGC--------------UUGGUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 43816 0.69 0.534689
Target:  5'- -uUGCCGGgcGUACcgccggacacaGGGCCGCCGCUCGc -3'
miRNA:   3'- ucACGGUCa-CAUG-----------CUUGGUGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.