Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23453 | 5' | -56.9 | NC_005259.1 | + | 37018 | 0.66 | 0.714877 |
Target: 5'- --cGCCGGggaacaugacaaUGU-CGAucuuggugcccGCCACCGCCCa -3' miRNA: 3'- ucaCGGUC------------ACAuGCU-----------UGGUGGCGGGc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 33463 | 0.7 | 0.454539 |
Target: 5'- cGUGCCgGGUGUcUGGACUGCCGCaCGg -3' miRNA: 3'- uCACGG-UCACAuGCUUGGUGGCGgGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 41416 | 0.7 | 0.464217 |
Target: 5'- gGGUGCCcacgauGUGcACGGGCCGCCauuugcGCCCc -3' miRNA: 3'- -UCACGGu-----CACaUGCUUGGUGG------CGGGc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 45648 | 0.69 | 0.483887 |
Target: 5'- cGGUGCCGccGUGaAC--ACCGCCGUCCGc -3' miRNA: 3'- -UCACGGU--CACaUGcuUGGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 22983 | 0.69 | 0.50395 |
Target: 5'- cGUGcCCGGUGU-CGAcGCCGCCGaggucaCCGa -3' miRNA: 3'- uCAC-GGUCACAuGCU-UGGUGGCg-----GGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 43688 | 0.69 | 0.513095 |
Target: 5'- --cGCCGGUG-GCGAACCucuugaaACCGCgCGa -3' miRNA: 3'- ucaCGGUCACaUGCUUGG-------UGGCGgGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 34626 | 0.69 | 0.514115 |
Target: 5'- uGUGCCAGacgaUGggcGCGGACCACacuaGCCgGa -3' miRNA: 3'- uCACGGUC----ACa--UGCUUGGUGg---CGGgC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 7249 | 0.69 | 0.521281 |
Target: 5'- --cGCCGGUGUcgaguGCGccaagaaacugcucGGCUACCGCCCc -3' miRNA: 3'- ucaCGGUCACA-----UGC--------------UUGGUGGCGGGc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 43816 | 0.69 | 0.534689 |
Target: 5'- -uUGCCGGgcGUACcgccggacacaGGGCCGCCGCUCGc -3' miRNA: 3'- ucACGGUCa-CAUG-----------CUUGGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 10823 | 0.7 | 0.435517 |
Target: 5'- cGGUGCCGaUGgacACGc-CCACCGCCUGa -3' miRNA: 3'- -UCACGGUcACa--UGCuuGGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 45306 | 0.71 | 0.426181 |
Target: 5'- --cGCCGGUG-ACGccgaGGCCGCCGCCg- -3' miRNA: 3'- ucaCGGUCACaUGC----UUGGUGGCGGgc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 37353 | 0.71 | 0.420636 |
Target: 5'- gGGuUGCCGcUGUGCGAguagcucacgcccucGgCACCGCCCGc -3' miRNA: 3'- -UC-ACGGUcACAUGCU---------------UgGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 26779 | 0.76 | 0.212433 |
Target: 5'- --cGCCGGUGccuCGGaacaccagcGCCGCCGCCCGg -3' miRNA: 3'- ucaCGGUCACau-GCU---------UGGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 56135 | 0.73 | 0.301584 |
Target: 5'- -cUGCCGGUGUA--AACCugCGUCCGg -3' miRNA: 3'- ucACGGUCACAUgcUUGGugGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 35186 | 0.72 | 0.339773 |
Target: 5'- cGUGCCGGUGaGCaGcACCguGCCGCCUGa -3' miRNA: 3'- uCACGGUCACaUG-CuUGG--UGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 39611 | 0.71 | 0.381347 |
Target: 5'- uGGUGCCAucagcgacgGUGUACG---CGCUGCCCGg -3' miRNA: 3'- -UCACGGU---------CACAUGCuugGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 11115 | 0.71 | 0.39006 |
Target: 5'- uGGUGCgaCGGUgacgGUGCGAGCCGUCGCCUGc -3' miRNA: 3'- -UCACG--GUCA----CAUGCUUGGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 14303 | 0.71 | 0.39006 |
Target: 5'- -aUGUCGGUgcGUAUGGccgcccucgacGCCGCCGCCCGc -3' miRNA: 3'- ucACGGUCA--CAUGCU-----------UGGUGGCGGGC- -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 27480 | 0.71 | 0.398902 |
Target: 5'- cGGgGUCGGUGUG---GCCACCGCCCc -3' miRNA: 3'- -UCaCGGUCACAUgcuUGGUGGCGGGc -5' |
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23453 | 5' | -56.9 | NC_005259.1 | + | 29859 | 0.71 | 0.40787 |
Target: 5'- -cUGUCGGgcauCGAacuGCCACCGCCCGa -3' miRNA: 3'- ucACGGUCacauGCU---UGGUGGCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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