miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23453 5' -56.9 NC_005259.1 + 620 0.68 0.545085
Target:  5'- uGUGCUGGUGauCGAccgugacaacGCCACCGCCg- -3'
miRNA:   3'- uCACGGUCACauGCU----------UGGUGGCGGgc -5'
23453 5' -56.9 NC_005259.1 + 754 0.68 0.587245
Target:  5'- --cGCCGGUGccuaccGCGu-CCACCGCgCCGa -3'
miRNA:   3'- ucaCGGUCACa-----UGCuuGGUGGCG-GGC- -5'
23453 5' -56.9 NC_005259.1 + 1040 0.66 0.714877
Target:  5'- uGUGCCGG-GUACGGuCCGaguucaCGCUCa -3'
miRNA:   3'- uCACGGUCaCAUGCUuGGUg-----GCGGGc -5'
23453 5' -56.9 NC_005259.1 + 3109 0.66 0.662057
Target:  5'- cGGgcgGCCAuugcgcggcaccGUGggcaGCGGACggCACCGCCCGu -3'
miRNA:   3'- -UCa--CGGU------------CACa---UGCUUG--GUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 3679 0.67 0.640675
Target:  5'- --aGCCAGau--CGucACCGCCGCCCa -3'
miRNA:   3'- ucaCGGUCacauGCu-UGGUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 7249 0.69 0.521281
Target:  5'- --cGCCGGUGUcgaguGCGccaagaaacugcucGGCUACCGCCCc -3'
miRNA:   3'- ucaCGGUCACA-----UGC--------------UUGGUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 8986 0.68 0.545085
Target:  5'- aGGUGCCAGcg-GCGAcgGCaGCCGCCuCGu -3'
miRNA:   3'- -UCACGGUCacaUGCU--UGgUGGCGG-GC- -5'
23453 5' -56.9 NC_005259.1 + 9789 0.68 0.574515
Target:  5'- -cUGcCCGGUGUGCccgcucgcgccACUACCGCCCGc -3'
miRNA:   3'- ucAC-GGUCACAUGcu---------UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 9949 0.68 0.545085
Target:  5'- --cGCCAccaauCGAGCCgACCGCCCGa -3'
miRNA:   3'- ucaCGGUcacauGCUUGG-UGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 10823 0.7 0.435517
Target:  5'- cGGUGCCGaUGgacACGc-CCACCGCCUGa -3'
miRNA:   3'- -UCACGGUcACa--UGCuuGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 11115 0.71 0.39006
Target:  5'- uGGUGCgaCGGUgacgGUGCGAGCCGUCGCCUGc -3'
miRNA:   3'- -UCACG--GUCA----CAUGCUUGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 11662 0.68 0.566064
Target:  5'- cGUGgCGGccacauCGAGCCACCGCCUc -3'
miRNA:   3'- uCACgGUCacau--GCUUGGUGGCGGGc -5'
23453 5' -56.9 NC_005259.1 + 12332 0.67 0.619262
Target:  5'- --cGCCAGcucACGcACCGCCGCCuCGa -3'
miRNA:   3'- ucaCGGUCacaUGCuUGGUGGCGG-GC- -5'
23453 5' -56.9 NC_005259.1 + 12992 0.68 0.587245
Target:  5'- uGGUGCUcGcGUucgcacuCGGcuacGCCGCCGCCCGg -3'
miRNA:   3'- -UCACGGuCaCAu------GCU----UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 14303 0.71 0.39006
Target:  5'- -aUGUCGGUgcGUAUGGccgcccucgacGCCGCCGCCCGc -3'
miRNA:   3'- ucACGGUCA--CAUGCU-----------UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 14468 0.66 0.704426
Target:  5'- gGGUGCCuucacgcucGUGgucCGAuCCGCUGCUCGg -3'
miRNA:   3'- -UCACGGu--------CACau-GCUuGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 18628 0.66 0.693909
Target:  5'- uGUGCCGcgcaucgccccGUucucgcauugGcGCGAuauGCCGCCGCCCGa -3'
miRNA:   3'- uCACGGU-----------CA----------CaUGCU---UGGUGGCGGGC- -5'
23453 5' -56.9 NC_005259.1 + 20069 0.66 0.714877
Target:  5'- cGGUGgCGGUcGUcaccACGucgaAACCACCGaCCCGu -3'
miRNA:   3'- -UCACgGUCA-CA----UGC----UUGGUGGC-GGGC- -5'
23453 5' -56.9 NC_005259.1 + 20155 0.66 0.704426
Target:  5'- --aGCCGGUGccCuGGCCACCgcGCCCGc -3'
miRNA:   3'- ucaCGGUCACauGcUUGGUGG--CGGGC- -5'
23453 5' -56.9 NC_005259.1 + 22983 0.69 0.50395
Target:  5'- cGUGcCCGGUGU-CGAcGCCGCCGaggucaCCGa -3'
miRNA:   3'- uCAC-GGUCACAuGCU-UGGUGGCg-----GGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.