Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23454 | 5' | -56.8 | NC_005259.1 | + | 41869 | 0.66 | 0.666623 |
Target: 5'- -cGAcgGGCa--GCACcg-UGGCGGGCc -3' miRNA: 3'- aaCUa-CCGgcgCGUGuuaACCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 43918 | 0.66 | 0.641587 |
Target: 5'- -cGAUGGgcagcgacgacaCCGCGCuacugacagcgucgGCGAUgGGCGGGg -3' miRNA: 3'- aaCUACC------------GGCGCG--------------UGUUAaCCGCCCg -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 44480 | 0.66 | 0.633953 |
Target: 5'- ---cUGGCCGgGC-CAGUUGGUgacguagaccgGGGUg -3' miRNA: 3'- aacuACCGGCgCGuGUUAACCG-----------CCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 55293 | 0.66 | 0.63068 |
Target: 5'- aUUGAgggacguuUGGCCGCGUgcgACGAccacagggguggucUUGGCGGcaGCg -3' miRNA: 3'- -AACU--------ACCGGCGCG---UGUU--------------AACCGCC--CG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 18763 | 0.66 | 0.623046 |
Target: 5'- -cGAcaUGGCCuGC-CACAucgcGGUGGGCa -3' miRNA: 3'- aaCU--ACCGG-CGcGUGUuaa-CCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 26020 | 0.66 | 0.621956 |
Target: 5'- -gGAUGGCCGCaaGCGgGUUGGCcagcagcgccgccGGGUu -3' miRNA: 3'- aaCUACCGGCGcgUGU-UAACCG-------------CCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 43311 | 0.67 | 0.612148 |
Target: 5'- cUGaAUGGCUGCGUugGccaccgccUUGGCgauGGGCa -3' miRNA: 3'- aAC-UACCGGCGCGugUu-------AACCG---CCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 42531 | 0.67 | 0.601266 |
Target: 5'- ----cGGCCccgauGgGCACcgaggUGGCGGGCa -3' miRNA: 3'- aacuaCCGG-----CgCGUGuua--ACCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 8640 | 0.67 | 0.601266 |
Target: 5'- -aGaAUGGCgG-GCACGAggcugUGGuCGGGCu -3' miRNA: 3'- aaC-UACCGgCgCGUGUUa----ACC-GCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 64889 | 0.67 | 0.568811 |
Target: 5'- gUUGAUGaGCCGCGUgacACGAgcgacGGCGaGCg -3' miRNA: 3'- -AACUAC-CGGCGCG---UGUUaa---CCGCcCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 51416 | 0.67 | 0.558083 |
Target: 5'- -cGAggGGCCG-GUugAGgucuugGGCGGGCc -3' miRNA: 3'- aaCUa-CCGGCgCGugUUaa----CCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 39504 | 0.67 | 0.558083 |
Target: 5'- cUUGAUGGCCGCGC-CGc-UGGCcaccaguccGGCc -3' miRNA: 3'- -AACUACCGGCGCGuGUuaACCGc--------CCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 41478 | 0.68 | 0.515824 |
Target: 5'- gUGAc-GCCGUcgaGCACGAccucggcggUGGCGGGCa -3' miRNA: 3'- aACUacCGGCG---CGUGUUa--------ACCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 25747 | 0.68 | 0.548478 |
Target: 5'- -gGAccGCCGCGCACAcuauaccgcuauGCGGGCa -3' miRNA: 3'- aaCUacCGGCGCGUGUuaac--------CGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 4991 | 0.68 | 0.526277 |
Target: 5'- -cGAUGGCCGgGCACuac-GGCaaGGUg -3' miRNA: 3'- aaCUACCGGCgCGUGuuaaCCGc-CCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 40867 | 0.68 | 0.509592 |
Target: 5'- --cAUGGCCGCcCACAGcucaccggccaccgUGGCGGGg -3' miRNA: 3'- aacUACCGGCGcGUGUUa-------------ACCGCCCg -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 40108 | 0.69 | 0.495177 |
Target: 5'- -cGAgucGGCgaaUGCGCucguGgAAUUGGCGGGCg -3' miRNA: 3'- aaCUa--CCG---GCGCG----UgUUAACCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 47961 | 0.69 | 0.474914 |
Target: 5'- -cGAUGGCCGcCGCGCcgcccgcgAAUaUGcCGGGCa -3' miRNA: 3'- aaCUACCGGC-GCGUG--------UUA-ACcGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 15394 | 0.69 | 0.464938 |
Target: 5'- --cGUGGCCGCGCACucccaagGGUGcGCu -3' miRNA: 3'- aacUACCGGCGCGUGuuaa---CCGCcCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 63865 | 0.69 | 0.445322 |
Target: 5'- -aGGUGGCCG-GCugGccUUGcGUGGGCg -3' miRNA: 3'- aaCUACCGGCgCGugUu-AAC-CGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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