Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23454 | 5' | -56.8 | NC_005259.1 | + | 3088 | 0.71 | 0.38054 |
Target: 5'- -aGAgaGCCGCGCAgCGAUgaGCGGGCg -3' miRNA: 3'- aaCUacCGGCGCGU-GUUAacCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 4991 | 0.68 | 0.526277 |
Target: 5'- -cGAUGGCCGgGCACuac-GGCaaGGUg -3' miRNA: 3'- aaCUACCGGCgCGUGuuaaCCGc-CCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 8640 | 0.67 | 0.601266 |
Target: 5'- -aGaAUGGCgG-GCACGAggcugUGGuCGGGCu -3' miRNA: 3'- aaC-UACCGgCgCGUGUUa----ACC-GCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 8948 | 0.71 | 0.346458 |
Target: 5'- -cGGUGGgCGCGC-CG--UGGaCGGGCa -3' miRNA: 3'- aaCUACCgGCGCGuGUuaACC-GCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 12016 | 0.72 | 0.314619 |
Target: 5'- -cGGUGGCCuuGUACGGU--GCGGGCg -3' miRNA: 3'- aaCUACCGGcgCGUGUUAacCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 15394 | 0.69 | 0.464938 |
Target: 5'- --cGUGGCCGCGCACucccaagGGUGcGCu -3' miRNA: 3'- aacUACCGGCGCGUGuuaa---CCGCcCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 18763 | 0.66 | 0.623046 |
Target: 5'- -cGAcaUGGCCuGC-CACAucgcGGUGGGCa -3' miRNA: 3'- aaCU--ACCGG-CGcGUGUuaa-CCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 25747 | 0.68 | 0.548478 |
Target: 5'- -gGAccGCCGCGCACAcuauaccgcuauGCGGGCa -3' miRNA: 3'- aaCUacCGGCGCGUGUuaac--------CGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 26020 | 0.66 | 0.621956 |
Target: 5'- -gGAUGGCCGCaaGCGgGUUGGCcagcagcgccgccGGGUu -3' miRNA: 3'- aaCUACCGGCGcgUGU-UAACCG-------------CCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 29953 | 0.7 | 0.407531 |
Target: 5'- ----cGGUCGCgGCugGuggGGCGGGCg -3' miRNA: 3'- aacuaCCGGCG-CGugUuaaCCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 32359 | 0.7 | 0.407531 |
Target: 5'- gUUGAUGaccGCCGUGUAg----GGCGGGCa -3' miRNA: 3'- -AACUAC---CGGCGCGUguuaaCCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 35662 | 0.7 | 0.407531 |
Target: 5'- -gGGUGGCCaGCGCGg---UGGUGGuGCa -3' miRNA: 3'- aaCUACCGG-CGCGUguuaACCGCC-CG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 39504 | 0.67 | 0.558083 |
Target: 5'- cUUGAUGGCCGCGC-CGc-UGGCcaccaguccGGCc -3' miRNA: 3'- -AACUACCGGCGCGuGUuaACCGc--------CCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 40108 | 0.69 | 0.495177 |
Target: 5'- -cGAgucGGCgaaUGCGCucguGgAAUUGGCGGGCg -3' miRNA: 3'- aaCUa--CCG---GCGCG----UgUUAACCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 40867 | 0.68 | 0.509592 |
Target: 5'- --cAUGGCCGCcCACAGcucaccggccaccgUGGCGGGg -3' miRNA: 3'- aacUACCGGCGcGUGUUa-------------ACCGCCCg -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 41478 | 0.68 | 0.515824 |
Target: 5'- gUGAc-GCCGUcgaGCACGAccucggcggUGGCGGGCa -3' miRNA: 3'- aACUacCGGCG---CGUGUUa--------ACCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 41634 | 0.74 | 0.244858 |
Target: 5'- aUGGUGGCgGUGC-CGGUcuGCGGGCg -3' miRNA: 3'- aACUACCGgCGCGuGUUAacCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 41869 | 0.66 | 0.666623 |
Target: 5'- -cGAcgGGCa--GCACcg-UGGCGGGCc -3' miRNA: 3'- aaCUa-CCGgcgCGUGuuaACCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 42531 | 0.67 | 0.601266 |
Target: 5'- ----cGGCCccgauGgGCACcgaggUGGCGGGCa -3' miRNA: 3'- aacuaCCGG-----CgCGUGuua--ACCGCCCG- -5' |
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23454 | 5' | -56.8 | NC_005259.1 | + | 43311 | 0.67 | 0.612148 |
Target: 5'- cUGaAUGGCUGCGUugGccaccgccUUGGCgauGGGCa -3' miRNA: 3'- aAC-UACCGGCGCGugUu-------AACCG---CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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