miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23454 5' -56.8 NC_005259.1 + 41869 0.66 0.666623
Target:  5'- -cGAcgGGCa--GCACcg-UGGCGGGCc -3'
miRNA:   3'- aaCUa-CCGgcgCGUGuuaACCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 40108 0.69 0.495177
Target:  5'- -cGAgucGGCgaaUGCGCucguGgAAUUGGCGGGCg -3'
miRNA:   3'- aaCUa--CCG---GCGCG----UgUUAACCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 40867 0.68 0.509592
Target:  5'- --cAUGGCCGCcCACAGcucaccggccaccgUGGCGGGg -3'
miRNA:   3'- aacUACCGGCGcGUGUUa-------------ACCGCCCg -5'
23454 5' -56.8 NC_005259.1 + 41478 0.68 0.515824
Target:  5'- gUGAc-GCCGUcgaGCACGAccucggcggUGGCGGGCa -3'
miRNA:   3'- aACUacCGGCG---CGUGUUa--------ACCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 4991 0.68 0.526277
Target:  5'- -cGAUGGCCGgGCACuac-GGCaaGGUg -3'
miRNA:   3'- aaCUACCGGCgCGUGuuaaCCGc-CCG- -5'
23454 5' -56.8 NC_005259.1 + 25747 0.68 0.548478
Target:  5'- -gGAccGCCGCGCACAcuauaccgcuauGCGGGCa -3'
miRNA:   3'- aaCUacCGGCGCGUGUuaac--------CGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 39504 0.67 0.558083
Target:  5'- cUUGAUGGCCGCGC-CGc-UGGCcaccaguccGGCc -3'
miRNA:   3'- -AACUACCGGCGCGuGUuaACCGc--------CCG- -5'
23454 5' -56.8 NC_005259.1 + 51416 0.67 0.558083
Target:  5'- -cGAggGGCCG-GUugAGgucuugGGCGGGCc -3'
miRNA:   3'- aaCUa-CCGGCgCGugUUaa----CCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 64889 0.67 0.568811
Target:  5'- gUUGAUGaGCCGCGUgacACGAgcgacGGCGaGCg -3'
miRNA:   3'- -AACUAC-CGGCGCG---UGUUaa---CCGCcCG- -5'
23454 5' -56.8 NC_005259.1 + 47961 0.69 0.474914
Target:  5'- -cGAUGGCCGcCGCGCcgcccgcgAAUaUGcCGGGCa -3'
miRNA:   3'- aaCUACCGGC-GCGUG--------UUA-ACcGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 15394 0.69 0.464938
Target:  5'- --cGUGGCCGCGCACucccaagGGUGcGCu -3'
miRNA:   3'- aacUACCGGCGCGUGuuaa---CCGCcCG- -5'
23454 5' -56.8 NC_005259.1 + 63865 0.69 0.445322
Target:  5'- -aGGUGGCCG-GCugGccUUGcGUGGGCg -3'
miRNA:   3'- aaCUACCGGCgCGugUu-AAC-CGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 12016 0.72 0.314619
Target:  5'- -cGGUGGCCuuGUACGGU--GCGGGCg -3'
miRNA:   3'- aaCUACCGGcgCGUGUUAacCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 51015 0.72 0.322367
Target:  5'- -gGAcguUGGUCGUGCuaccgACGAgcGGCGGGCa -3'
miRNA:   3'- aaCU---ACCGGCGCG-----UGUUaaCCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 8948 0.71 0.346458
Target:  5'- -cGGUGGgCGCGC-CG--UGGaCGGGCa -3'
miRNA:   3'- aaCUACCgGCGCGuGUuaACC-GCCCG- -5'
23454 5' -56.8 NC_005259.1 + 3088 0.71 0.38054
Target:  5'- -aGAgaGCCGCGCAgCGAUgaGCGGGCg -3'
miRNA:   3'- aaCUacCGGCGCGU-GUUAacCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 32359 0.7 0.407531
Target:  5'- gUUGAUGaccGCCGUGUAg----GGCGGGCa -3'
miRNA:   3'- -AACUAC---CGGCGCGUguuaaCCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 29953 0.7 0.407531
Target:  5'- ----cGGUCGCgGCugGuggGGCGGGCg -3'
miRNA:   3'- aacuaCCGGCG-CGugUuaaCCGCCCG- -5'
23454 5' -56.8 NC_005259.1 + 35662 0.7 0.407531
Target:  5'- -gGGUGGCCaGCGCGg---UGGUGGuGCa -3'
miRNA:   3'- aaCUACCGG-CGCGUguuaACCGCC-CG- -5'
23454 5' -56.8 NC_005259.1 + 55709 0.7 0.435689
Target:  5'- gUUGAUGGCCGCGaGCAccucgcccuuGUUGGCaaGCu -3'
miRNA:   3'- -AACUACCGGCGCgUGU----------UAACCGccCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.