Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23459 | 5' | -56.6 | NC_005259.1 | + | 66146 | 0.67 | 0.653906 |
Target: 5'- -aCGGCGuGCGUUGGcauccugugugcGCGcauGCUCAUCGGc -3' miRNA: 3'- uaGCCGC-UGUAGCC------------CGC---UGAGUAGCC- -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 13784 | 0.67 | 0.685687 |
Target: 5'- -aCGGCGACGagcagUGGuGCGACaUCAcCGGc -3' miRNA: 3'- uaGCCGCUGUa----GCC-CGCUG-AGUaGCC- -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 27390 | 0.66 | 0.706651 |
Target: 5'- -cCGGCGGCgguGUCGGcaGCGGCggCAgcUCGGu -3' miRNA: 3'- uaGCCGCUG---UAGCC--CGCUGa-GU--AGCC- -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 24724 | 0.66 | 0.709774 |
Target: 5'- cUCGGCGAUcacgauugaugcgguGUgGGGUGccgaggcGCUCAUCGa -3' miRNA: 3'- uAGCCGCUG---------------UAgCCCGC-------UGAGUAGCc -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 50680 | 0.66 | 0.717035 |
Target: 5'- cGUCGGUGcCGaCGaGGCGcuGCUCGUCGu -3' miRNA: 3'- -UAGCCGCuGUaGC-CCGC--UGAGUAGCc -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 49631 | 0.66 | 0.717035 |
Target: 5'- cAUCGGCGGCAgccgCGucGGCGAUgg--CGGc -3' miRNA: 3'- -UAGCCGCUGUa---GC--CCGCUGaguaGCC- -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 17601 | 0.66 | 0.717035 |
Target: 5'- cUCGGCgcgauGACGUgGGGCGGCgaggaCGGu -3' miRNA: 3'- uAGCCG-----CUGUAgCCCGCUGagua-GCC- -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 65729 | 0.66 | 0.717035 |
Target: 5'- --aGGCGAguUgGGGuCGACcCAUUGGa -3' miRNA: 3'- uagCCGCUguAgCCC-GCUGaGUAGCC- -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 4116 | 0.66 | 0.727341 |
Target: 5'- cUCGGCGGCcUCGacguGGCcaaGAC-CGUCGGc -3' miRNA: 3'- uAGCCGCUGuAGC----CCG---CUGaGUAGCC- -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 62744 | 0.66 | 0.727341 |
Target: 5'- -cCGGCGGCAguaCGcGGUGguACUCGUgGGc -3' miRNA: 3'- uaGCCGCUGUa--GC-CCGC--UGAGUAgCC- -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 60316 | 0.66 | 0.746668 |
Target: 5'- -aCGGCGAaacCGGGCGuguugacGCUCAaggCGGc -3' miRNA: 3'- uaGCCGCUguaGCCCGC-------UGAGUa--GCC- -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 57027 | 0.66 | 0.747675 |
Target: 5'- cUCGGCGcgGUgGGGuCGcACUCGUCGu -3' miRNA: 3'- uAGCCGCugUAgCCC-GC-UGAGUAGCc -5' |
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23459 | 5' | -56.6 | NC_005259.1 | + | 24600 | 0.66 | 0.747675 |
Target: 5'- -cCGGUGACgGUUGGGaaCGuaugcccaaGCUCAUCGGc -3' miRNA: 3'- uaGCCGCUG-UAGCCC--GC---------UGAGUAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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