Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23460 | 3' | -60.3 | NC_005259.1 | + | 15793 | 0.67 | 0.479298 |
|
Target: 5'- uGGC-CGCCGGGaucgaccGCCCGACaUCcaAGGUg -3' miRNA: 3'- -CCGcGCGGCCUga-----UGGGCUG-AG--UCCA- -5' |
|||||||
| 23460 | 3' | -60.3 | NC_005259.1 | + | 68873 | 0.66 | 0.498722 |
|
Target: 5'- -cCGCGCCGGGC-GCgCCGAUg-AGGUa -3' miRNA: 3'- ccGCGCGGCCUGaUG-GGCUGagUCCA- -5' |
|||||||
| 23460 | 3' | -60.3 | NC_005259.1 | + | 38027 | 0.66 | 0.508565 |
|
Target: 5'- aGGCccGCGuuGGugUACCCGGC-CAc-- -3' miRNA: 3'- -CCG--CGCggCCugAUGGGCUGaGUcca -5' |
|||||||
| 23460 | 3' | -60.3 | NC_005259.1 | + | 67425 | 0.66 | 0.508565 |
|
Target: 5'- cGGgGUGCCGGGCUcacGCuuGAgcgcgUCGGGg -3' miRNA: 3'- -CCgCGCGGCCUGA---UGggCUg----AGUCCa -5' |
|||||||
| 23460 | 3' | -60.3 | NC_005259.1 | + | 61506 | 0.66 | 0.548693 |
|
Target: 5'- aGGCGC-UCGGugUGCCgguCGACcucgUCGGGa -3' miRNA: 3'- -CCGCGcGGCCugAUGG---GCUG----AGUCCa -5' |
|||||||
| 23460 | 3' | -60.3 | NC_005259.1 | + | 7448 | 0.66 | 0.558887 |
|
Target: 5'- uGGCaGCGCCGaggauggcuuGACUugacaauCCCGACauaggCGGGUa -3' miRNA: 3'- -CCG-CGCGGC----------CUGAu------GGGCUGa----GUCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home