miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23460 5' -56 NC_005259.1 + 59136 0.85 0.05426
Target:  5'- -aGCGuCGAGCu-CGGCAGCGGUGCCGg -3'
miRNA:   3'- caUGC-GCUUGuuGCCGUCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 48441 0.79 0.145107
Target:  5'- -gGCGCGAgGCAGCGGCAGCGcGUuCCAc -3'
miRNA:   3'- caUGCGCU-UGUUGCCGUCGC-CAcGGU- -5'
23460 5' -56 NC_005259.1 + 20140 0.76 0.211025
Target:  5'- cGU-CGCG-AUGACGGCAGcCGGUGCCc -3'
miRNA:   3'- -CAuGCGCuUGUUGCCGUC-GCCACGGu -5'
23460 5' -56 NC_005259.1 + 7225 0.76 0.216609
Target:  5'- cUGCGUGAugaACGACGGCAGCcgcgccGGUGUCGa -3'
miRNA:   3'- cAUGCGCU---UGUUGCCGUCG------CCACGGU- -5'
23460 5' -56 NC_005259.1 + 55312 0.75 0.246445
Target:  5'- cGUGCGaCGAccACAgggguggucuugGCGGCAGCGGUGgCGa -3'
miRNA:   3'- -CAUGC-GCU--UGU------------UGCCGUCGCCACgGU- -5'
23460 5' -56 NC_005259.1 + 19951 0.75 0.252807
Target:  5'- uGUGCGUccGCAACGGCGGCucggcggugugGGUGCCc -3'
miRNA:   3'- -CAUGCGcuUGUUGCCGUCG-----------CCACGGu -5'
23460 5' -56 NC_005259.1 + 7396 0.75 0.268625
Target:  5'- --cCGCGAgacccGCAACGGCauccucgucgccgucGGCGGUGCCc -3'
miRNA:   3'- cauGCGCU-----UGUUGCCG---------------UCGCCACGGu -5'
23460 5' -56 NC_005259.1 + 47156 0.74 0.293112
Target:  5'- cGUGCGC-AGCAgaucaccguaGCGGCgaaggucGGCGGUGCCGu -3'
miRNA:   3'- -CAUGCGcUUGU----------UGCCG-------UCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 8199 0.73 0.323189
Target:  5'- uUACGCGcccgaugucgggcAACAGCGagcguGCGGUGGUGCCGa -3'
miRNA:   3'- cAUGCGC-------------UUGUUGC-----CGUCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 41620 0.73 0.331853
Target:  5'- --uCGCGAggcugACcAUGGUGGCGGUGCCGg -3'
miRNA:   3'- cauGCGCU-----UGuUGCCGUCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 34044 0.73 0.339877
Target:  5'- -gGCGCGuucuuguuGGCAuuguccgaccACGGCGGCGGUGuCCAc -3'
miRNA:   3'- caUGCGC--------UUGU----------UGCCGUCGCCAC-GGU- -5'
23460 5' -56 NC_005259.1 + 26395 0.72 0.356344
Target:  5'- --uCGCGAuucCGACGccgggcGCGGCGGUGCCGc -3'
miRNA:   3'- cauGCGCUu--GUUGC------CGUCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 27392 0.72 0.364785
Target:  5'- -gGCgGCGGugucggcaGCGGCGGCAGCucGGUGCCc -3'
miRNA:   3'- caUG-CGCU--------UGUUGCCGUCG--CCACGGu -5'
23460 5' -56 NC_005259.1 + 55360 0.72 0.373364
Target:  5'- -aACGCcuGAGCGACGGCAGCcgugaucaGUGCCc -3'
miRNA:   3'- caUGCG--CUUGUUGCCGUCGc-------CACGGu -5'
23460 5' -56 NC_005259.1 + 26812 0.72 0.382078
Target:  5'- gGUugGCcGGUAcCGGCGGUGGUGCCGg -3'
miRNA:   3'- -CAugCGcUUGUuGCCGUCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 51563 0.72 0.382078
Target:  5'- cGUugGgGccAACGAucCGGCAGcCGGUGCCGa -3'
miRNA:   3'- -CAugCgC--UUGUU--GCCGUC-GCCACGGU- -5'
23460 5' -56 NC_005259.1 + 10335 0.72 0.390927
Target:  5'- -gGCGaCGGGCucgGCGGCAGCGG-GCUc -3'
miRNA:   3'- caUGC-GCUUGu--UGCCGUCGCCaCGGu -5'
23460 5' -56 NC_005259.1 + 63034 0.71 0.40902
Target:  5'- --cCGCGAGCugacucGACaGCAGCGGUGCg- -3'
miRNA:   3'- cauGCGCUUG------UUGcCGUCGCCACGgu -5'
23460 5' -56 NC_005259.1 + 66899 0.71 0.417331
Target:  5'- --uCGUGAACGGCGGUAgauccggcagcgcGCGGUGCUc -3'
miRNA:   3'- cauGCGCUUGUUGCCGU-------------CGCCACGGu -5'
23460 5' -56 NC_005259.1 + 36242 0.71 0.437117
Target:  5'- -aGCGCGAGCGccugcguCGGCAGCGccacGCCGg -3'
miRNA:   3'- caUGCGCUUGUu------GCCGUCGCca--CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.