miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23460 5' -56 NC_005259.1 + 200 0.67 0.645548
Target:  5'- -gGCGCGuggcGCGACGGCaagcaguucgGGCaGUGCUAc -3'
miRNA:   3'- caUGCGCu---UGUUGCCG----------UCGcCACGGU- -5'
23460 5' -56 NC_005259.1 + 400 0.66 0.688759
Target:  5'- -cGgGCGAAUAcCaGCAGCGcGUGCCc -3'
miRNA:   3'- caUgCGCUUGUuGcCGUCGC-CACGGu -5'
23460 5' -56 NC_005259.1 + 3119 0.7 0.456451
Target:  5'- uUGCGCGGcacCGugGGCAGCGGacgGCa- -3'
miRNA:   3'- cAUGCGCUu--GUugCCGUCGCCa--CGgu -5'
23460 5' -56 NC_005259.1 + 4262 0.67 0.67801
Target:  5'- cUGCGaGGACAacggGCGGCuGCGcUGCCAc -3'
miRNA:   3'- cAUGCgCUUGU----UGCCGuCGCcACGGU- -5'
23460 5' -56 NC_005259.1 + 5721 0.68 0.598895
Target:  5'- -aGCGcCGGACGGCGGCcauucucgcggccaAGCGGcgagcUGCCu -3'
miRNA:   3'- caUGC-GCUUGUUGCCG--------------UCGCC-----ACGGu -5'
23460 5' -56 NC_005259.1 + 6381 0.68 0.623831
Target:  5'- -gGCGCGAugguCAACGucauuuucgaGGCGGUGCCc -3'
miRNA:   3'- caUGCGCUu---GUUGCcg--------UCGCCACGGu -5'
23460 5' -56 NC_005259.1 + 6524 0.67 0.645548
Target:  5'- cGUGCGCGcGACAAcCGGCcucggggcgAGCGGUGa-- -3'
miRNA:   3'- -CAUGCGC-UUGUU-GCCG---------UCGCCACggu -5'
23460 5' -56 NC_005259.1 + 7225 0.76 0.216609
Target:  5'- cUGCGUGAugaACGACGGCAGCcgcgccGGUGUCGa -3'
miRNA:   3'- cAUGCGCU---UGUUGCCGUCG------CCACGGU- -5'
23460 5' -56 NC_005259.1 + 7396 0.75 0.268625
Target:  5'- --cCGCGAgacccGCAACGGCauccucgucgccgucGGCGGUGCCc -3'
miRNA:   3'- cauGCGCU-----UGUUGCCG---------------UCGCCACGGu -5'
23460 5' -56 NC_005259.1 + 8199 0.73 0.323189
Target:  5'- uUACGCGcccgaugucgggcAACAGCGagcguGCGGUGGUGCCGa -3'
miRNA:   3'- cAUGCGC-------------UUGUUGC-----CGUCGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 9257 0.68 0.59133
Target:  5'- -aGCGCccGAACcggucccgaAACGGCGaguuauGCGGUGCCGc -3'
miRNA:   3'- caUGCG--CUUG---------UUGCCGU------CGCCACGGU- -5'
23460 5' -56 NC_005259.1 + 10335 0.72 0.390927
Target:  5'- -gGCGaCGGGCucgGCGGCAGCGG-GCUc -3'
miRNA:   3'- caUGC-GCUUGu--UGCCGUCGCCaCGGu -5'
23460 5' -56 NC_005259.1 + 13774 0.7 0.506685
Target:  5'- -gACGUGuucgacGGCGACGaGCAGUGGUGCg- -3'
miRNA:   3'- caUGCGC------UUGUUGC-CGUCGCCACGgu -5'
23460 5' -56 NC_005259.1 + 14521 0.66 0.710089
Target:  5'- ---gGCGAGCAcGCGGUgcguuuCGGUGCCGa -3'
miRNA:   3'- caugCGCUUGU-UGCCGuc----GCCACGGU- -5'
23460 5' -56 NC_005259.1 + 19099 0.66 0.710089
Target:  5'- cUGCGCGAACucacCGGCGcUGGUGUg- -3'
miRNA:   3'- cAUGCGCUUGuu--GCCGUcGCCACGgu -5'
23460 5' -56 NC_005259.1 + 19951 0.75 0.252807
Target:  5'- uGUGCGUccGCAACGGCGGCucggcggugugGGUGCCc -3'
miRNA:   3'- -CAUGCGcuUGUUGCCGUCG-----------CCACGGu -5'
23460 5' -56 NC_005259.1 + 20140 0.76 0.211025
Target:  5'- cGU-CGCG-AUGACGGCAGcCGGUGCCc -3'
miRNA:   3'- -CAuGCGCuUGUUGCCGUC-GCCACGGu -5'
23460 5' -56 NC_005259.1 + 20359 0.68 0.59133
Target:  5'- cUACGCGuccaccucguGCGACGGUGgauacGUGGUGCCu -3'
miRNA:   3'- cAUGCGCu---------UGUUGCCGU-----CGCCACGGu -5'
23460 5' -56 NC_005259.1 + 20640 0.66 0.741496
Target:  5'- cGUuCGCGAcacguuCGGCGGCAcCGGgGCCGa -3'
miRNA:   3'- -CAuGCGCUu-----GUUGCCGUcGCCaCGGU- -5'
23460 5' -56 NC_005259.1 + 21191 0.67 0.645548
Target:  5'- -gGCGCGAGCAccaaGCuGCAa-GGUGCCGa -3'
miRNA:   3'- caUGCGCUUGU----UGcCGUcgCCACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.