Results 1 - 20 of 59 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23460 | 5' | -56 | NC_005259.1 | + | 20640 | 0.66 | 0.741496 |
Target: 5'- cGUuCGCGAcacguuCGGCGGCAcCGGgGCCGa -3' miRNA: 3'- -CAuGCGCUu-----GUUGCCGUcGCCaCGGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 27392 | 0.72 | 0.364785 |
Target: 5'- -gGCgGCGGugucggcaGCGGCGGCAGCucGGUGCCc -3' miRNA: 3'- caUG-CGCU--------UGUUGCCGUCG--CCACGGu -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 55360 | 0.72 | 0.373364 |
Target: 5'- -aACGCcuGAGCGACGGCAGCcgugaucaGUGCCc -3' miRNA: 3'- caUGCG--CUUGUUGCCGUCGc-------CACGGu -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 26812 | 0.72 | 0.382078 |
Target: 5'- gGUugGCcGGUAcCGGCGGUGGUGCCGg -3' miRNA: 3'- -CAugCGcUUGUuGCCGUCGCCACGGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 51563 | 0.72 | 0.382078 |
Target: 5'- cGUugGgGccAACGAucCGGCAGcCGGUGCCGa -3' miRNA: 3'- -CAugCgC--UUGUU--GCCGUC-GCCACGGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 10335 | 0.72 | 0.390927 |
Target: 5'- -gGCGaCGGGCucgGCGGCAGCGG-GCUc -3' miRNA: 3'- caUGC-GCUUGu--UGCCGUCGCCaCGGu -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 63034 | 0.71 | 0.40902 |
Target: 5'- --cCGCGAGCugacucGACaGCAGCGGUGCg- -3' miRNA: 3'- cauGCGCUUG------UUGcCGUCGCCACGgu -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 66899 | 0.71 | 0.417331 |
Target: 5'- --uCGUGAACGGCGGUAgauccggcagcgcGCGGUGCUc -3' miRNA: 3'- cauGCGCUUGUUGCCGU-------------CGCCACGGu -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 36242 | 0.71 | 0.437117 |
Target: 5'- -aGCGCGAGCGccugcguCGGCAGCGccacGCCGg -3' miRNA: 3'- caUGCGCUUGUu------GCCGUCGCca--CGGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 26395 | 0.72 | 0.356344 |
Target: 5'- --uCGCGAuucCGACGccgggcGCGGCGGUGCCGc -3' miRNA: 3'- cauGCGCUu--GUUGC------CGUCGCCACGGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 34044 | 0.73 | 0.339877 |
Target: 5'- -gGCGCGuucuuguuGGCAuuguccgaccACGGCGGCGGUGuCCAc -3' miRNA: 3'- caUGCGC--------UUGU----------UGCCGUCGCCAC-GGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 41620 | 0.73 | 0.331853 |
Target: 5'- --uCGCGAggcugACcAUGGUGGCGGUGCCGg -3' miRNA: 3'- cauGCGCU-----UGuUGCCGUCGCCACGGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 48441 | 0.79 | 0.145107 |
Target: 5'- -gGCGCGAgGCAGCGGCAGCGcGUuCCAc -3' miRNA: 3'- caUGCGCU-UGUUGCCGUCGC-CAcGGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 20140 | 0.76 | 0.211025 |
Target: 5'- cGU-CGCG-AUGACGGCAGcCGGUGCCc -3' miRNA: 3'- -CAuGCGCuUGUUGCCGUC-GCCACGGu -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 7225 | 0.76 | 0.216609 |
Target: 5'- cUGCGUGAugaACGACGGCAGCcgcgccGGUGUCGa -3' miRNA: 3'- cAUGCGCU---UGUUGCCGUCG------CCACGGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 55312 | 0.75 | 0.246445 |
Target: 5'- cGUGCGaCGAccACAgggguggucuugGCGGCAGCGGUGgCGa -3' miRNA: 3'- -CAUGC-GCU--UGU------------UGCCGUCGCCACgGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 19951 | 0.75 | 0.252807 |
Target: 5'- uGUGCGUccGCAACGGCGGCucggcggugugGGUGCCc -3' miRNA: 3'- -CAUGCGcuUGUUGCCGUCG-----------CCACGGu -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 7396 | 0.75 | 0.268625 |
Target: 5'- --cCGCGAgacccGCAACGGCauccucgucgccgucGGCGGUGCCc -3' miRNA: 3'- cauGCGCU-----UGUUGCCG---------------UCGCCACGGu -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 47156 | 0.74 | 0.293112 |
Target: 5'- cGUGCGC-AGCAgaucaccguaGCGGCgaaggucGGCGGUGCCGu -3' miRNA: 3'- -CAUGCGcUUGU----------UGCCG-------UCGCCACGGU- -5' |
|||||||
23460 | 5' | -56 | NC_005259.1 | + | 8199 | 0.73 | 0.323189 |
Target: 5'- uUACGCGcccgaugucgggcAACAGCGagcguGCGGUGGUGCCGa -3' miRNA: 3'- cAUGCGC-------------UUGUUGC-----CGUCGCCACGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home