Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23462 | 3' | -57.1 | NC_005259.1 | + | 2037 | 0.68 | 0.582402 |
Target: 5'- cAGUGCGGUGGGCGGucaccGGC----ACCGa -3' miRNA: 3'- -UCGCGCCACUCGCU-----CCGcuuaUGGCg -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 3097 | 0.7 | 0.469755 |
Target: 5'- cGCaGCGaUGAGCG-GGCGGccAUugCGCg -3' miRNA: 3'- uCG-CGCcACUCGCuCCGCU--UAugGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 5491 | 0.66 | 0.678298 |
Target: 5'- uAGCGCc--GAGCGAGGauCGAGcUACgCGCg -3' miRNA: 3'- -UCGCGccaCUCGCUCC--GCUU-AUG-GCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 5557 | 0.72 | 0.360913 |
Target: 5'- cGCGUGGgguGGUGAcGGCGAgaccGUGCCGUg -3' miRNA: 3'- uCGCGCCac-UCGCU-CCGCU----UAUGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 6200 | 0.78 | 0.137978 |
Target: 5'- gAGCaGC-GUGAGCGGGGUGAGccGCCGCg -3' miRNA: 3'- -UCG-CGcCACUCGCUCCGCUUa-UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 6547 | 0.68 | 0.550836 |
Target: 5'- gGGCgaGCGGUGAagcuguGCGcGGCGugucagGCCGCc -3' miRNA: 3'- -UCG--CGCCACU------CGCuCCGCuua---UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 9030 | 0.68 | 0.561307 |
Target: 5'- -aCGCGGUGcucgaucauguGCGGGGCGGuaACCGg -3' miRNA: 3'- ucGCGCCACu----------CGCUCCGCUuaUGGCg -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 10746 | 0.66 | 0.709858 |
Target: 5'- cGCGCGcugccGGGCGAucaucaugucgGGCGggUcaucgagguggGCCGCg -3' miRNA: 3'- uCGCGCca---CUCGCU-----------CCGCuuA-----------UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 14156 | 0.66 | 0.657033 |
Target: 5'- gAGCGCGucguGUGGaucucGCcGGGCGggUggcaACCGCu -3' miRNA: 3'- -UCGCGC----CACU-----CGcUCCGCuuA----UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 16307 | 0.67 | 0.603654 |
Target: 5'- cGUGCacguGUGAuGUG-GGCGGAUACUGCc -3' miRNA: 3'- uCGCGc---CACU-CGCuCCGCUUAUGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 17603 | 0.66 | 0.678298 |
Target: 5'- cGGCGCGaUGAcGUGGGGCGGcgAggacgguuUCGCa -3' miRNA: 3'- -UCGCGCcACU-CGCUCCGCUuaU--------GGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 18780 | 0.67 | 0.603654 |
Target: 5'- -uCGCGGUGggcaAGCGGuGGCagGGAcGCCGCa -3' miRNA: 3'- ucGCGCCAC----UCGCU-CCG--CUUaUGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 23587 | 0.68 | 0.582402 |
Target: 5'- -cCGUGGUGAGCGuGGCacggcAGUuccCCGCg -3' miRNA: 3'- ucGCGCCACUCGCuCCGc----UUAu--GGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 26525 | 0.7 | 0.473671 |
Target: 5'- gAGCGCGGUGAGCagcuuGGCcaccacgaucucaccGAGgcuguaGCCGCc -3' miRNA: 3'- -UCGCGCCACUCGcu---CCG---------------CUUa-----UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 27147 | 0.66 | 0.699396 |
Target: 5'- cGGCuGCGGUGu-UGGGGCcaacGAUGCCGUc -3' miRNA: 3'- -UCG-CGCCACucGCUCCGc---UUAUGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 27217 | 0.72 | 0.360913 |
Target: 5'- gAGCuCGGUGAGCGGGcCGAA-AUCGCc -3' miRNA: 3'- -UCGcGCCACUCGCUCcGCUUaUGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 27462 | 0.66 | 0.678298 |
Target: 5'- cGCGCGGgaaauugGGGcCGGGGuCGGuguggccACCGCc -3' miRNA: 3'- uCGCGCCa------CUC-GCUCC-GCUua-----UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 27996 | 0.75 | 0.22727 |
Target: 5'- uGGUGCGGgugccgGGGCGGGGUcgccgGggUugCGCg -3' miRNA: 3'- -UCGCGCCa-----CUCGCUCCG-----CuuAugGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 29121 | 0.68 | 0.571831 |
Target: 5'- uGC-UGGUGAGCGcGGCGGuAUucgccucgcucACCGCg -3' miRNA: 3'- uCGcGCCACUCGCuCCGCU-UA-----------UGGCG- -5' |
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23462 | 3' | -57.1 | NC_005259.1 | + | 29953 | 0.68 | 0.550836 |
Target: 5'- cGGuCGCGGcuGGUGGGGCGGGcggugACCGUc -3' miRNA: 3'- -UC-GCGCCacUCGCUCCGCUUa----UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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