miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23463 3' -53.5 NC_005259.1 + 45514 0.69 0.725731
Target:  5'- gGCcaccgCGCCGGUgUUGgccGCCGUGGCu -3'
miRNA:   3'- -CGuaa--GCGGCUAgAGCac-CGGCAUCG- -5'
23463 3' -53.5 NC_005259.1 + 58433 0.7 0.65064
Target:  5'- gGCAgauugCGCUGAUCg-GUGGCCuUGGUg -3'
miRNA:   3'- -CGUaa---GCGGCUAGagCACCGGcAUCG- -5'
23463 3' -53.5 NC_005259.1 + 67054 0.7 0.639764
Target:  5'- aGCAcccgugCGCCGAUCUCaagGGCC--AGCg -3'
miRNA:   3'- -CGUaa----GCGGCUAGAGca-CCGGcaUCG- -5'
23463 3' -53.5 NC_005259.1 + 11052 0.71 0.607132
Target:  5'- cGCAUgacgUGCCGAUCggcucagCGUGgaaGCCGUacGGCu -3'
miRNA:   3'- -CGUAa---GCGGCUAGa------GCAC---CGGCA--UCG- -5'
23463 3' -53.5 NC_005259.1 + 28960 0.71 0.585467
Target:  5'- cGCA-UCGCCGAggUCGgugccgaGGCCGcgAGCg -3'
miRNA:   3'- -CGUaAGCGGCUagAGCa------CCGGCa-UCG- -5'
23463 3' -53.5 NC_005259.1 + 31889 0.72 0.542656
Target:  5'- ---cUCGCCGGUCUCaaGGcCCGgcGCg -3'
miRNA:   3'- cguaAGCGGCUAGAGcaCC-GGCauCG- -5'
23463 3' -53.5 NC_005259.1 + 60213 0.73 0.480597
Target:  5'- ---cUCGCCGAUCUCGUcGGCgcugAGCu -3'
miRNA:   3'- cguaAGCGGCUAGAGCA-CCGgca-UCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.