miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23467 5' -66.4 NC_005259.1 + 57987 0.65 0.31542
Target:  5'- uCGUGACCCCGGuCGAgCCagCGaCCauguugaggaucguCCGGCg -3'
miRNA:   3'- -GCGUUGGGGCC-GCUgGG--GC-GG--------------GGCCG- -5'
23467 5' -66.4 NC_005259.1 + 34008 0.66 0.310527
Target:  5'- uGCAA--CCGGCuGuAUCCgGCCUCGGCg -3'
miRNA:   3'- gCGUUggGGCCG-C-UGGGgCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 9140 0.66 0.310527
Target:  5'- gGCAGCCgUGcuCGugCCCGUCgaCGGCa -3'
miRNA:   3'- gCGUUGGgGCc-GCugGGGCGGg-GCCG- -5'
23467 5' -66.4 NC_005259.1 + 31747 0.66 0.310527
Target:  5'- cCGCGAgCgCUGGUGuCCCCaccGCCCCGuCa -3'
miRNA:   3'- -GCGUUgG-GGCCGCuGGGG---CGGGGCcG- -5'
23467 5' -66.4 NC_005259.1 + 291 0.66 0.303638
Target:  5'- aCGCGGCCUCGcGCuGAUCUCGaCCgggggugcguCCGGCc -3'
miRNA:   3'- -GCGUUGGGGC-CG-CUGGGGC-GG----------GGCCG- -5'
23467 5' -66.4 NC_005259.1 + 43192 0.66 0.302955
Target:  5'- -cCGACCUCGGCGGCgaugucgacgCCCGCCugacccgCCGaGCu -3'
miRNA:   3'- gcGUUGGGGCCGCUG----------GGGCGG-------GGC-CG- -5'
23467 5' -66.4 NC_005259.1 + 42496 0.66 0.29956
Target:  5'- cCGUGACCCgucCGGCGGuguggccagcagccgUCCgGCCCCgaugGGCa -3'
miRNA:   3'- -GCGUUGGG---GCCGCU---------------GGGgCGGGG----CCG- -5'
23467 5' -66.4 NC_005259.1 + 12998 0.66 0.296866
Target:  5'- uCGCGuucGCaCUCGGCuACgCCGCcgCCCGGCc -3'
miRNA:   3'- -GCGU---UG-GGGCCGcUGgGGCG--GGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 16237 0.66 0.296866
Target:  5'- aCGC-ACCCCGGUG-CUgCGCaccgaCCGaGCa -3'
miRNA:   3'- -GCGuUGGGGCCGCuGGgGCGg----GGC-CG- -5'
23467 5' -66.4 NC_005259.1 + 17749 0.66 0.290212
Target:  5'- aCGCGAUCCgugaGGCcGCCgCGCgCCgGGCc -3'
miRNA:   3'- -GCGUUGGGg---CCGcUGGgGCG-GGgCCG- -5'
23467 5' -66.4 NC_005259.1 + 61780 0.66 0.290212
Target:  5'- cCGCAuucuGCacaCCGGCGGCCUgauaGCCCUGuaGCu -3'
miRNA:   3'- -GCGU----UGg--GGCCGCUGGGg---CGGGGC--CG- -5'
23467 5' -66.4 NC_005259.1 + 17918 0.66 0.290212
Target:  5'- uGgAugCCCGGUcugGACCgCGC-CCGGUg -3'
miRNA:   3'- gCgUugGGGCCG---CUGGgGCGgGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 7009 0.66 0.290212
Target:  5'- uCGCcuaaaccgaaAACCCCGcCGAg--CGCCCCGGCg -3'
miRNA:   3'- -GCG----------UUGGGGCcGCUgggGCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 7772 0.66 0.283676
Target:  5'- aGagaAACCCCGcCGAg--CGCCCCGGCg -3'
miRNA:   3'- gCg--UUGGGGCcGCUgggGCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 31868 0.66 0.283676
Target:  5'- gGCGAUCUuguCGGUcguGACCUCGCcggucucaaggCCCGGCg -3'
miRNA:   3'- gCGUUGGG---GCCG---CUGGGGCG-----------GGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 22975 0.66 0.283676
Target:  5'- aCGCAACucgugCCCGGUgucGACgCCGCCgaGGUc -3'
miRNA:   3'- -GCGUUG-----GGGCCG---CUGgGGCGGggCCG- -5'
23467 5' -66.4 NC_005259.1 + 32191 0.66 0.277257
Target:  5'- gCGC-GCCUCGGUcugcgacuuGGCCUcagacaccgaCGCCUCGGCa -3'
miRNA:   3'- -GCGuUGGGGCCG---------CUGGG----------GCGGGGCCG- -5'
23467 5' -66.4 NC_005259.1 + 35820 0.66 0.277257
Target:  5'- cCGUacGACCCCGcauaGCcGCCaCCGCCCgCGaGCa -3'
miRNA:   3'- -GCG--UUGGGGC----CGcUGG-GGCGGG-GC-CG- -5'
23467 5' -66.4 NC_005259.1 + 48027 0.67 0.267228
Target:  5'- cCGCGcccacgauguugaccACCCCGGUGGCCacggcggguagCGCCgCCGcGCc -3'
miRNA:   3'- -GCGU---------------UGGGGCCGCUGGg----------GCGG-GGC-CG- -5'
23467 5' -66.4 NC_005259.1 + 31387 0.67 0.262324
Target:  5'- aGC-ACCCCGGUGACaucggagcacagCGCCCCGa- -3'
miRNA:   3'- gCGuUGGGGCCGCUGgg----------GCGGGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.