miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23468 3' -60 NC_005259.1 + 21176 0.7 0.342742
Target:  5'- gGCaGUCGGGUcaUCGGCGCGaGCaccaaGCUGCa -3'
miRNA:   3'- gUGgCGGCUCA--AGCCGUGC-CG-----CGACG- -5'
23468 3' -60 NC_005259.1 + 57180 0.7 0.342742
Target:  5'- uCGCCGCCGuAGUUCGGCccgcgaaccucgACGcCGUUGa -3'
miRNA:   3'- -GUGGCGGC-UCAAGCCG------------UGCcGCGACg -5'
23468 3' -60 NC_005259.1 + 51508 0.7 0.319771
Target:  5'- aCGCCGCCGAucucgacgcgcGUgaccUCGuGCACGGgGCcggGCa -3'
miRNA:   3'- -GUGGCGGCU-----------CA----AGC-CGUGCCgCGa--CG- -5'
23468 3' -60 NC_005259.1 + 55019 0.7 0.312375
Target:  5'- gGCgGUCGuc-UCGGCACGG-GCUGCc -3'
miRNA:   3'- gUGgCGGCucaAGCCGUGCCgCGACG- -5'
23468 3' -60 NC_005259.1 + 32365 0.7 0.312375
Target:  5'- gACCGCCGuGUagGGCG-GGCaCUGCc -3'
miRNA:   3'- gUGGCGGCuCAagCCGUgCCGcGACG- -5'
23468 3' -60 NC_005259.1 + 28961 0.7 0.312375
Target:  5'- gCAUCGCCGAGgUCGGUgccgaggccGCGaGCGCccGCu -3'
miRNA:   3'- -GUGGCGGCUCaAGCCG---------UGC-CGCGa-CG- -5'
23468 3' -60 NC_005259.1 + 51662 0.7 0.30511
Target:  5'- uGCCGCgCGGGcgcgUCgGGCACGGgCGC-GCg -3'
miRNA:   3'- gUGGCG-GCUCa---AG-CCGUGCC-GCGaCG- -5'
23468 3' -60 NC_005259.1 + 7179 0.7 0.30511
Target:  5'- gCACCGgCGAGUgccCGGCcuGCGGacgcaccggGCUGCg -3'
miRNA:   3'- -GUGGCgGCUCAa--GCCG--UGCCg--------CGACG- -5'
23468 3' -60 NC_005259.1 + 54486 0.7 0.30439
Target:  5'- -cCCGCCGAGggucaUCGGCgggcaugGCGGCGaUGUg -3'
miRNA:   3'- guGGCGGCUCa----AGCCG-------UGCCGCgACG- -5'
23468 3' -60 NC_005259.1 + 36066 0.69 0.383608
Target:  5'- cCACCuGCUGuGUgcUCGuCGCGGUGCUGUu -3'
miRNA:   3'- -GUGG-CGGCuCA--AGCcGUGCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 26800 0.69 0.366879
Target:  5'- gCGCCGCCGcccGGUUggcCGGUaccgGCGGUGgUGCc -3'
miRNA:   3'- -GUGGCGGC---UCAA---GCCG----UGCCGCgACG- -5'
23468 3' -60 NC_005259.1 + 1535 0.69 0.358705
Target:  5'- uCACCggcaucaucgggGCCGcGUUCGGgGCGGUgacGCUGUg -3'
miRNA:   3'- -GUGG------------CGGCuCAAGCCgUGCCG---CGACG- -5'
23468 3' -60 NC_005259.1 + 6431 0.69 0.350659
Target:  5'- -cUCGCCGAugUCGGCACcgucGCGCUGa -3'
miRNA:   3'- guGGCGGCUcaAGCCGUGc---CGCGACg -5'
23468 3' -60 NC_005259.1 + 45180 0.68 0.436729
Target:  5'- uGCgCGCCGAGgUCaGCGCGGUGaugacggGCg -3'
miRNA:   3'- gUG-GCGGCUCaAGcCGUGCCGCga-----CG- -5'
23468 3' -60 NC_005259.1 + 24282 0.68 0.436729
Target:  5'- aAgCGCuCGAccUCGGgAUGGUGCUGCu -3'
miRNA:   3'- gUgGCG-GCUcaAGCCgUGCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 26047 0.68 0.436729
Target:  5'- gCGCCGCCGGGUU-GGCcAUGcCGCcGCc -3'
miRNA:   3'- -GUGGCGGCUCAAgCCG-UGCcGCGaCG- -5'
23468 3' -60 NC_005259.1 + 27530 0.68 0.418549
Target:  5'- aCGCCGUCGAGgccccaCGGCG-GGaUGUUGCg -3'
miRNA:   3'- -GUGGCGGCUCaa----GCCGUgCC-GCGACG- -5'
23468 3' -60 NC_005259.1 + 16505 0.68 0.418549
Target:  5'- gCAUgGCCGAGa---GCGaGGCGCUGCg -3'
miRNA:   3'- -GUGgCGGCUCaagcCGUgCCGCGACG- -5'
23468 3' -60 NC_005259.1 + 28998 0.68 0.409633
Target:  5'- cUACgGCCacGAGaUCGGCgaauGCGGUGuCUGCg -3'
miRNA:   3'- -GUGgCGG--CUCaAGCCG----UGCCGC-GACG- -5'
23468 3' -60 NC_005259.1 + 44571 0.68 0.44042
Target:  5'- gCGCCGaCCGGcaggcucaugauGUUCGGCAUGcccgcagcgcccuuaGCGUUGCc -3'
miRNA:   3'- -GUGGC-GGCU------------CAAGCCGUGC---------------CGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.