miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23469 5' -64.2 NC_005259.1 + 46283 0.66 0.342567
Target:  5'- gGUUCUGCaacAGCgGGGCCGCCgUGGCu -3'
miRNA:   3'- -UAGGACGggcUCG-UCUGGCGGgGCCG- -5'
23469 5' -64.2 NC_005259.1 + 19657 0.66 0.342567
Target:  5'- -aCC-GCCuCGGGCAG-CCGCuacaucCCCGGUc -3'
miRNA:   3'- uaGGaCGG-GCUCGUCuGGCG------GGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 64757 0.66 0.342567
Target:  5'- -aCCgcGCCuCGcGaCGGugCGCCUCGGCg -3'
miRNA:   3'- uaGGa-CGG-GCuC-GUCugGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 9091 0.66 0.341796
Target:  5'- -cCCguUGCCCGccgagGGCGGggaacucaaucccACgCGCCCCGGUa -3'
miRNA:   3'- uaGG--ACGGGC-----UCGUC-------------UG-GCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 16206 0.66 0.327386
Target:  5'- -cCCcGCCUGAGUuccugaucagguGGGCCGaacgcaCCCCGGUg -3'
miRNA:   3'- uaGGaCGGGCUCG------------UCUGGC------GGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 60137 0.66 0.319984
Target:  5'- cGUCCUGCgCG-GCcuuGGCCGCCgCCucagcGGCc -3'
miRNA:   3'- -UAGGACGgGCuCGu--CUGGCGG-GG-----CCG- -5'
23469 5' -64.2 NC_005259.1 + 26833 0.66 0.312708
Target:  5'- ---gUGCCgGGGCGGuCUGCUCgGGCa -3'
miRNA:   3'- uaggACGGgCUCGUCuGGCGGGgCCG- -5'
23469 5' -64.2 NC_005259.1 + 37361 0.66 0.312708
Target:  5'- --gCUGUgCGAGUAGcucaCGCCCuCGGCa -3'
miRNA:   3'- uagGACGgGCUCGUCug--GCGGG-GCCG- -5'
23469 5' -64.2 NC_005259.1 + 20163 0.66 0.312708
Target:  5'- -cCCUGgccaCCGcGCccGCCGCCUCGGCu -3'
miRNA:   3'- uaGGACg---GGCuCGucUGGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 23886 0.67 0.284864
Target:  5'- uAUCCgcugccGCCCGAGCc-GCCGCgCCCGcCg -3'
miRNA:   3'- -UAGGa-----CGGGCUCGucUGGCG-GGGCcG- -5'
23469 5' -64.2 NC_005259.1 + 60554 0.67 0.271693
Target:  5'- cGUCggcaUGCCCGgugccgacGGuCAGGCgGCCCaCGGCg -3'
miRNA:   3'- -UAGg---ACGGGC--------UC-GUCUGgCGGG-GCCG- -5'
23469 5' -64.2 NC_005259.1 + 14877 0.67 0.265293
Target:  5'- --gCUGCCCGAGCc-GCCGCCguaUGGUc -3'
miRNA:   3'- uagGACGGGCUCGucUGGCGGg--GCCG- -5'
23469 5' -64.2 NC_005259.1 + 33146 0.68 0.259015
Target:  5'- gAUCUUGCC---GUAGACCGCCUgaGGCa -3'
miRNA:   3'- -UAGGACGGgcuCGUCUGGCGGGg-CCG- -5'
23469 5' -64.2 NC_005259.1 + 53182 0.68 0.24091
Target:  5'- -aCCgccGCCCGucGCGGugU-CCCCGGCg -3'
miRNA:   3'- uaGGa--CGGGCu-CGUCugGcGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 29915 0.68 0.24091
Target:  5'- --gCUGCCCGAgaccaucgacGCGuGGCCGCCaCgCGGCc -3'
miRNA:   3'- uagGACGGGCU----------CGU-CUGGCGG-G-GCCG- -5'
23469 5' -64.2 NC_005259.1 + 48107 0.69 0.218425
Target:  5'- gGUCCggucagGaaaCCGAGCAcaccGccucgaccaccGCCGCCCCGGCc -3'
miRNA:   3'- -UAGGa-----Cg--GGCUCGU----C-----------UGGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 53359 0.69 0.217887
Target:  5'- -gCCcGCcucgacggcuaaaCCGAGaCAGcaaACCGCCCCGGCc -3'
miRNA:   3'- uaGGaCG-------------GGCUC-GUC---UGGCGGGGCCG- -5'
23469 5' -64.2 NC_005259.1 + 31742 0.69 0.217887
Target:  5'- -gCCUGCCgCGAGCgcuGGuguccccACCGCCCCGuCa -3'
miRNA:   3'- uaGGACGG-GCUCG---UC-------UGGCGGGGCcG- -5'
23469 5' -64.2 NC_005259.1 + 45934 0.69 0.213091
Target:  5'- -cUCUGCCCGuGCAGAUC-CCUCaGCa -3'
miRNA:   3'- uaGGACGGGCuCGUCUGGcGGGGcCG- -5'
23469 5' -64.2 NC_005259.1 + 34884 0.69 0.213091
Target:  5'- -aCCggggUGCCuCGGGCAGgacggGCCGCUCgGGCa -3'
miRNA:   3'- uaGG----ACGG-GCUCGUC-----UGGCGGGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.