miRNA: 3'- -UUCGACGa----GUGGCGCGAgaAGagCGg -5'
miRNA: 3'- -UUCGACGAGUggCGCGAGaa--------GAGCGG- -5'
miRNA: 3'- -UUCGaCGAGugGCGCGAGaa-----GAGCgG- -5'
miRNA: 3'- uucGACGAGUGG-----CGCGaga-AGA-GCGG- -5'
miRNA: 3'- -UUCGACGAGUGG-CGCgagaAGAGCGG- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23470 | 5' | -57.3 | NC_005259.1 | + | 8470 | 0.66 | 0.60409 |
|
Target: 5'- aGAGCUGCacgagCACCGCGCUg-UCg-GCa -3' miRNA: 3'- -UUCGACGa----GUGGCGCGAgaAGagCGg -5' |
|||||||
| 23470 | 5' | -57.3 | NC_005259.1 | + | 59162 | 0.66 | 0.614922 |
|
Target: 5'- gGAGCUGCUCAggGCGCUUauacauggcgCUUGUCu -3' miRNA: 3'- -UUCGACGAGUggCGCGAGaa--------GAGCGG- -5' |
|||||||
| 23470 | 5' | -57.3 | NC_005259.1 | + | 3335 | 0.66 | 0.625769 |
|
Target: 5'- cGGGCaGCUCugCGUGCUCggcacgaCUCGaCg -3' miRNA: 3'- -UUCGaCGAGugGCGCGAGaa-----GAGCgG- -5' |
|||||||
| 23470 | 5' | -57.3 | NC_005259.1 | + | 24145 | 0.66 | 0.625769 |
|
Target: 5'- --cCUGCUCGCCgaguuGCGCgaugUCUaCGCCa -3' miRNA: 3'- uucGACGAGUGG-----CGCGaga-AGA-GCGG- -5' |
|||||||
| 23470 | 5' | -57.3 | NC_005259.1 | + | 49742 | 0.66 | 0.625769 |
|
Target: 5'- aGAGCUGCUCGUCaGUGacggUCUUGCCg -3' miRNA: 3'- -UUCGACGAGUGG-CGCgagaAGAGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home