miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23471 5' -55.1 NC_005259.1 + 6649 0.66 0.81955
Target:  5'- -gACGACAcGGUCGaggguguccgUGACGCgcgagcuGCCCg -3'
miRNA:   3'- gaUGCUGUaCCAGU----------GCUGCGac-----CGGG- -5'
23471 5' -55.1 NC_005259.1 + 32202 0.66 0.81955
Target:  5'- uCUGCGACuUGGccUCAgacacCGACGCcucGGCaCCg -3'
miRNA:   3'- -GAUGCUGuACC--AGU-----GCUGCGa--CCG-GG- -5'
23471 5' -55.1 NC_005259.1 + 46563 0.66 0.81955
Target:  5'- -cGCGcCuAUGGUCGCGGCGUcGaccgcgccGCCCg -3'
miRNA:   3'- gaUGCuG-UACCAGUGCUGCGaC--------CGGG- -5'
23471 5' -55.1 NC_005259.1 + 50082 0.66 0.81955
Target:  5'- cCUGCGGCAgc-UCGcCGAUGgUGcGCCCg -3'
miRNA:   3'- -GAUGCUGUaccAGU-GCUGCgAC-CGGG- -5'
23471 5' -55.1 NC_005259.1 + 22180 0.66 0.801097
Target:  5'- -cGCGcccauCGUGGUUGCGAccuugcagaCGUUGGCCa -3'
miRNA:   3'- gaUGCu----GUACCAGUGCU---------GCGACCGGg -5'
23471 5' -55.1 NC_005259.1 + 16793 0.66 0.791611
Target:  5'- --uCGACGcGGUCGCGuacaucGCGCUcggGGCCg -3'
miRNA:   3'- gauGCUGUaCCAGUGC------UGCGA---CCGGg -5'
23471 5' -55.1 NC_005259.1 + 9061 0.66 0.772173
Target:  5'- --cCGGCucgGUGGUCAUGGCcacaGCauaGGCCCg -3'
miRNA:   3'- gauGCUG---UACCAGUGCUG----CGa--CCGGG- -5'
23471 5' -55.1 NC_005259.1 + 13462 0.67 0.752182
Target:  5'- -cGCGGCGcUGGugcUCACcGCGCUG-CCCg -3'
miRNA:   3'- gaUGCUGU-ACC---AGUGcUGCGACcGGG- -5'
23471 5' -55.1 NC_005259.1 + 39490 0.67 0.752182
Target:  5'- -cACGAgAuaucgagcuugaUGGcCGCGcCGCUGGCCa -3'
miRNA:   3'- gaUGCUgU------------ACCaGUGCuGCGACCGGg -5'
23471 5' -55.1 NC_005259.1 + 49858 0.67 0.742005
Target:  5'- -gAgGAUcguUGGUCACGACGCguUGcGCCg -3'
miRNA:   3'- gaUgCUGu--ACCAGUGCUGCG--AC-CGGg -5'
23471 5' -55.1 NC_005259.1 + 21173 0.67 0.742005
Target:  5'- -gACGGCAgucgGGUCAuCGGCGC-GaGCaCCa -3'
miRNA:   3'- gaUGCUGUa---CCAGU-GCUGCGaC-CG-GG- -5'
23471 5' -55.1 NC_005259.1 + 35672 0.67 0.731722
Target:  5'- -cGCgGugGUGGUgcacaGCGACGCcGuGCCCg -3'
miRNA:   3'- gaUG-CugUACCAg----UGCUGCGaC-CGGG- -5'
23471 5' -55.1 NC_005259.1 + 65168 0.67 0.731722
Target:  5'- -cAUGGCccgccgGGUCAaGGCGCUGGUCg -3'
miRNA:   3'- gaUGCUGua----CCAGUgCUGCGACCGGg -5'
23471 5' -55.1 NC_005259.1 + 50942 0.67 0.729654
Target:  5'- -aACGGCucguugcauccuUGGcUCGCGugGCUGuCCCa -3'
miRNA:   3'- gaUGCUGu-----------ACC-AGUGCugCGACcGGG- -5'
23471 5' -55.1 NC_005259.1 + 5003 0.68 0.710881
Target:  5'- aCUACGGCAaggUGGUCGaGAuCGauccGGCCCc -3'
miRNA:   3'- -GAUGCUGU---ACCAGUgCU-GCga--CCGGG- -5'
23471 5' -55.1 NC_005259.1 + 51259 0.68 0.710881
Target:  5'- uUGCGGCucgcgGUGGUCACGguGCGC-GGCa- -3'
miRNA:   3'- gAUGCUG-----UACCAGUGC--UGCGaCCGgg -5'
23471 5' -55.1 NC_005259.1 + 37196 0.68 0.704567
Target:  5'- gCUGCGGCccuUGccGcCACcgccgccgccgccggGGCGCUGGCCCg -3'
miRNA:   3'- -GAUGCUGu--AC--CaGUG---------------CUGCGACCGGG- -5'
23471 5' -55.1 NC_005259.1 + 58570 0.68 0.700344
Target:  5'- gUugGGCcgGaUCGCGGCGCggcugccgGGCCg -3'
miRNA:   3'- gAugCUGuaCcAGUGCUGCGa-------CCGGg -5'
23471 5' -55.1 NC_005259.1 + 14060 0.68 0.668393
Target:  5'- -gGCGACGagaccagCACGGCGgUGGCCUa -3'
miRNA:   3'- gaUGCUGUacca---GUGCUGCgACCGGG- -5'
23471 5' -55.1 NC_005259.1 + 55889 0.68 0.657664
Target:  5'- --cCGACcucgggGGUCGCGccgggguCGCUGGCCa -3'
miRNA:   3'- gauGCUGua----CCAGUGCu------GCGACCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.