miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23472 3' -63.4 NC_005259.1 + 64433 0.66 0.353832
Target:  5'- cGCCGACgagcugCCGG-GGCGCUGCccuuggGGCg-- -3'
miRNA:   3'- -CGGUUG------GGCCgCCGCGACGa-----CCGguu -5'
23472 3' -63.4 NC_005259.1 + 52372 0.66 0.353832
Target:  5'- cGCCGACUcaagCGGCuGCGCagccUGCcucgGGCCAu -3'
miRNA:   3'- -CGGUUGG----GCCGcCGCG----ACGa---CCGGUu -5'
23472 3' -63.4 NC_005259.1 + 1829 0.66 0.353832
Target:  5'- cGCCGACCUGcuCGcCGCUGCcgccgaGGCCGAg -3'
miRNA:   3'- -CGGUUGGGCc-GCcGCGACGa-----CCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 53615 0.66 0.345875
Target:  5'- gGUCAGCaggcgUCGaGCGGUGCcGUUGGCCGc -3'
miRNA:   3'- -CGGUUG-----GGC-CGCCGCGaCGACCGGUu -5'
23472 3' -63.4 NC_005259.1 + 37758 0.66 0.345875
Target:  5'- aCCAGCgCGGUGGCccCUGCgGGCaCGAg -3'
miRNA:   3'- cGGUUGgGCCGCCGc-GACGaCCG-GUU- -5'
23472 3' -63.4 NC_005259.1 + 28331 0.66 0.338824
Target:  5'- uGCCGucCuuGGCGGCGaaaucgaggccacggUGCUGGCUg- -3'
miRNA:   3'- -CGGUu-GggCCGCCGCg--------------ACGACCGGuu -5'
23472 3' -63.4 NC_005259.1 + 8821 0.66 0.337271
Target:  5'- cGCCGGgCCGGUGaguugacGCGCUGC--GCCGAc -3'
miRNA:   3'- -CGGUUgGGCCGC-------CGCGACGacCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 25929 0.66 0.337271
Target:  5'- cGCCggUCCGGUGaGCGCacgccggUGCccGGCCc- -3'
miRNA:   3'- -CGGuuGGGCCGC-CGCG-------ACGa-CCGGuu -5'
23472 3' -63.4 NC_005259.1 + 36854 0.66 0.330348
Target:  5'- cGCC-GCCCGcuGCGcCGUUGCUGGCa-- -3'
miRNA:   3'- -CGGuUGGGC--CGCcGCGACGACCGguu -5'
23472 3' -63.4 NC_005259.1 + 26816 0.66 0.330348
Target:  5'- gGCCggUaCCGGCGGUGgUGCcggGGCgGu -3'
miRNA:   3'- -CGGuuG-GGCCGCCGCgACGa--CCGgUu -5'
23472 3' -63.4 NC_005259.1 + 63617 0.66 0.329585
Target:  5'- gGCCAccgacGCCUgauagaucaucguGGCGaGCuGCUcGCUGGCCGGg -3'
miRNA:   3'- -CGGU-----UGGG-------------CCGC-CG-CGA-CGACCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 24285 0.66 0.32278
Target:  5'- cGCuCGACCuCGGgaUGGUGCUGCUGcGCgAu -3'
miRNA:   3'- -CG-GUUGG-GCC--GCCGCGACGAC-CGgUu -5'
23472 3' -63.4 NC_005259.1 + 25050 0.66 0.32203
Target:  5'- gGCCGguaGCCCguuuucaggcaagGGUGGCGCUGCcaccGCCGc -3'
miRNA:   3'- -CGGU---UGGG-------------CCGCCGCGACGac--CGGUu -5'
23472 3' -63.4 NC_005259.1 + 4503 0.66 0.315341
Target:  5'- cGCCAccGCgCCGGgagUGGCGCUGCgcGGCa-- -3'
miRNA:   3'- -CGGU--UG-GGCC---GCCGCGACGa-CCGguu -5'
23472 3' -63.4 NC_005259.1 + 58935 0.67 0.308033
Target:  5'- gGCgGGCgCGGUGGCaGCgucgGCcuUGGCCAGc -3'
miRNA:   3'- -CGgUUGgGCCGCCG-CGa---CG--ACCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 60215 0.67 0.300855
Target:  5'- cGCCGAUCuCGuCGGCGCUgagcucGCUGGCa-- -3'
miRNA:   3'- -CGGUUGG-GCcGCCGCGA------CGACCGguu -5'
23472 3' -63.4 NC_005259.1 + 40545 0.67 0.296611
Target:  5'- uGCCGugguagucgacgcgcGCCCGcGCGGUGUUGCUgucGGCg-- -3'
miRNA:   3'- -CGGU---------------UGGGC-CGCCGCGACGA---CCGguu -5'
23472 3' -63.4 NC_005259.1 + 30765 0.67 0.293807
Target:  5'- uGCCGACgCCGGUGGCaCcGCUG-CCGu -3'
miRNA:   3'- -CGGUUG-GGCCGCCGcGaCGACcGGUu -5'
23472 3' -63.4 NC_005259.1 + 38874 0.67 0.293807
Target:  5'- cGCCcGCaauGGCGGUGUUgacgacGCUGGCCGGa -3'
miRNA:   3'- -CGGuUGgg-CCGCCGCGA------CGACCGGUU- -5'
23472 3' -63.4 NC_005259.1 + 41626 0.67 0.293807
Target:  5'- gGCUGACCaUGGUGGCGgUGCcGGUCu- -3'
miRNA:   3'- -CGGUUGG-GCCGCCGCgACGaCCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.