miRNA display CGI


Results 21 - 40 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23476 3' -58.3 NC_005259.1 + 56311 0.67 0.605947
Target:  5'- -gGCCGGACCCucgucgccguCGAgcaAUCCGACUuCCu -3'
miRNA:   3'- cgCGGCCUGGG----------GCUa--UGGGUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 56068 0.7 0.418549
Target:  5'- gGCGUCGaGACCgucgagcagaUCGGUGCUCGucgggGCCACCg -3'
miRNA:   3'- -CGCGGC-CUGG----------GGCUAUGGGU-----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 55961 0.69 0.464828
Target:  5'- uGUG-CGGAcauccCCUCGAUGCCCucACCAUCa -3'
miRNA:   3'- -CGCgGCCU-----GGGGCUAUGGGu-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 55590 0.66 0.668697
Target:  5'- cGCGCUGG-CCaCgCGAUACCaCGucucGCgCGCCu -3'
miRNA:   3'- -CGCGGCCuGG-G-GCUAUGG-GU----UG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 55504 0.66 0.668697
Target:  5'- aGCGUcaCGaGGCCCacagCGAacugUGCCCAcagcGCCGCCu -3'
miRNA:   3'- -CGCG--GC-CUGGG----GCU----AUGGGU----UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 53273 0.67 0.616403
Target:  5'- uCGCCGGugCCgccaaGAUcgACCuCAGCC-CCu -3'
miRNA:   3'- cGCGGCCugGGg----CUA--UGG-GUUGGuGG- -5'
23476 3' -58.3 NC_005259.1 + 52841 0.69 0.474402
Target:  5'- uCGacaCGGACCCCGAgcUGCCCGuaCACg -3'
miRNA:   3'- cGCg--GCCUGGGGCU--AUGGGUugGUGg -5'
23476 3' -58.3 NC_005259.1 + 52297 0.74 0.233669
Target:  5'- cGCGCCuaucucuACCUCGGUACCCAcAUCACCu -3'
miRNA:   3'- -CGCGGcc-----UGGGGCUAUGGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 51455 0.71 0.381913
Target:  5'- cGCGCCGauagagcuuguuGCCCuCGGcgACCCAcACCGCCg -3'
miRNA:   3'- -CGCGGCc-----------UGGG-GCUa-UGGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 51349 0.66 0.658264
Target:  5'- -aGCuCGGAUaugCCCGGUgGCaCCGGCaCACCg -3'
miRNA:   3'- cgCG-GCCUG---GGGCUA-UG-GGUUG-GUGG- -5'
23476 3' -58.3 NC_005259.1 + 51227 0.66 0.679098
Target:  5'- cCGCCGGAUcguaggCCCGGUACgUca-CGCCg -3'
miRNA:   3'- cGCGGCCUG------GGGCUAUGgGuugGUGG- -5'
23476 3' -58.3 NC_005259.1 + 50412 0.68 0.554127
Target:  5'- cGCGCCGGuGCCuuGAccgGCUCGGgCAgCg -3'
miRNA:   3'- -CGCGGCC-UGGggCUa--UGGGUUgGUgG- -5'
23476 3' -58.3 NC_005259.1 + 50093 0.67 0.605947
Target:  5'- uCGCCGaugguGCgCCCGAgguUGCCCGuacgcacgggcACCGCCa -3'
miRNA:   3'- cGCGGCc----UG-GGGCU---AUGGGU-----------UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 49644 0.68 0.513633
Target:  5'- cGCGUCGGcgauggcgGCCUCGAUACgC-GCCugCu -3'
miRNA:   3'- -CGCGGCC--------UGGGGCUAUGgGuUGGugG- -5'
23476 3' -58.3 NC_005259.1 + 49441 0.68 0.543904
Target:  5'- aGCGCCGccuuggucGGCagCCgGAUGCCCAGCagguCGCCc -3'
miRNA:   3'- -CGCGGC--------CUG--GGgCUAUGGGUUG----GUGG- -5'
23476 3' -58.3 NC_005259.1 + 48915 0.7 0.400836
Target:  5'- aGCuGCUGGGCCugaCCGAcGCCacgcacaaGGCCACCg -3'
miRNA:   3'- -CG-CGGCCUGG---GGCUaUGGg-------UUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 48501 0.68 0.554127
Target:  5'- cGCGCUugaGGGCCgCGAcUugCCGcACUGCCg -3'
miRNA:   3'- -CGCGG---CCUGGgGCU-AugGGU-UGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 48398 0.66 0.668697
Target:  5'- cCGCCGacGCCCgccguCGAgucACCgCGACCGCCa -3'
miRNA:   3'- cGCGGCc-UGGG-----GCUa--UGG-GUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 48131 0.71 0.358705
Target:  5'- cCGCCucGACCaCCGccgcCCCGGCCACCa -3'
miRNA:   3'- cGCGGc-CUGG-GGCuau-GGGUUGGUGG- -5'
23476 3' -58.3 NC_005259.1 + 48028 0.69 0.459132
Target:  5'- cGCGCCcacgauguugaccACCCCGGUGgCCAcggcggguagcGCCGCCg -3'
miRNA:   3'- -CGCGGcc-----------UGGGGCUAUgGGU-----------UGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.