miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
235 5' -65.9 AC_000008.1 + 3803 0.66 0.169692
Target:  5'- aGCCGC-UGCAgCCAccGCCCGCGGg-- -3'
miRNA:   3'- aCGGCGcGUGUgGGU--CGGGCGCCggu -5'
235 5' -65.9 AC_000008.1 + 17269 0.66 0.169692
Target:  5'- aUGCCGCgGUGCAggCGGUcgCUGCGGCCGc -3'
miRNA:   3'- -ACGGCG-CGUGUggGUCG--GGCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 15980 0.66 0.169692
Target:  5'- -aCCGCGCGC-CCUggGGCgcgcacaaaCGCGGCCGc -3'
miRNA:   3'- acGGCGCGUGuGGG--UCGg--------GCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 28058 0.66 0.169692
Target:  5'- cUGCCGCGCGagACCUAGCC-GCGaaCCu -3'
miRNA:   3'- -ACGGCGCGUg-UGGGUCGGgCGCc-GGu -5'
235 5' -65.9 AC_000008.1 + 26143 0.66 0.169692
Target:  5'- cGCCGCcCGCugCC-GCCCGCcacGGUg- -3'
miRNA:   3'- aCGGCGcGUGugGGuCGGGCG---CCGgu -5'
235 5' -65.9 AC_000008.1 + 26816 0.66 0.169244
Target:  5'- cGCUGCGUcugGCGCCCAacgaacccguaucGaCCCGCGaGCUu -3'
miRNA:   3'- aCGGCGCG---UGUGGGU-------------C-GGGCGC-CGGu -5'
235 5' -65.9 AC_000008.1 + 12414 0.66 0.165256
Target:  5'- cUGaCUGCGCGCAauccugacgcguUCCGGCagcagCCGCaGGCCAa -3'
miRNA:   3'- -AC-GGCGCGUGU------------GGGUCG-----GGCG-CCGGU- -5'
235 5' -65.9 AC_000008.1 + 29483 0.66 0.165256
Target:  5'- uUGgCGCGUGCACCUgguGCCCGaCGaGCgCAc -3'
miRNA:   3'- -ACgGCGCGUGUGGGu--CGGGC-GC-CG-GU- -5'
235 5' -65.9 AC_000008.1 + 25073 0.66 0.165256
Target:  5'- cGCUGCGCGCGgCCAGU----GGCCAa -3'
miRNA:   3'- aCGGCGCGUGUgGGUCGggcgCCGGU- -5'
235 5' -65.9 AC_000008.1 + 24582 0.66 0.160923
Target:  5'- cUGCCGUGCcaACCgCAGCCgaGCGGaCAa -3'
miRNA:   3'- -ACGGCGCGugUGG-GUCGGg-CGCCgGU- -5'
235 5' -65.9 AC_000008.1 + 16082 0.66 0.160923
Target:  5'- cGCCGC-CACcaguguCCaCAGUggaCGCGGCCAu -3'
miRNA:   3'- aCGGCGcGUGu-----GG-GUCGg--GCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 29304 0.66 0.156694
Target:  5'- -uUCGaCGCGCGCCUgcuGCCCGgGGUCu -3'
miRNA:   3'- acGGC-GCGUGUGGGu--CGGGCgCCGGu -5'
235 5' -65.9 AC_000008.1 + 5408 0.66 0.156694
Target:  5'- cUGCCG-GUcuuCGCCCuGCgCGuCGGCCAg -3'
miRNA:   3'- -ACGGCgCGu--GUGGGuCGgGC-GCCGGU- -5'
235 5' -65.9 AC_000008.1 + 23187 0.66 0.156276
Target:  5'- aGCgGUGCagccacaACGCgCAGCCCGUGGgCu -3'
miRNA:   3'- aCGgCGCG-------UGUGgGUCGGGCGCCgGu -5'
235 5' -65.9 AC_000008.1 + 29540 0.66 0.152565
Target:  5'- cGuuGCGCGCGaauacgUgCAGCUaaacauCGCGGCCAa -3'
miRNA:   3'- aCggCGCGUGU------GgGUCGG------GCGCCGGU- -5'
235 5' -65.9 AC_000008.1 + 12029 0.66 0.152565
Target:  5'- gGCgGCGCGaGCUCAGCgaCCGCGaGCUg -3'
miRNA:   3'- aCGgCGCGUgUGGGUCG--GGCGC-CGGu -5'
235 5' -65.9 AC_000008.1 + 13907 0.66 0.148535
Target:  5'- gGcCCGCGCcCGCCCA-CCCGUcGUCAa -3'
miRNA:   3'- aC-GGCGCGuGUGGGUcGGGCGcCGGU- -5'
235 5' -65.9 AC_000008.1 + 21595 0.67 0.144602
Target:  5'- gGuCCGUGUGCACCgGccGCaCCGCGGCg- -3'
miRNA:   3'- aC-GGCGCGUGUGGgU--CG-GGCGCCGgu -5'
235 5' -65.9 AC_000008.1 + 16426 0.67 0.133368
Target:  5'- gUGcCCGUGCGCACCCGcccCCCGCGcaaCUAg -3'
miRNA:   3'- -AC-GGCGCGUGUGGGUc--GGGCGCc--GGU- -5'
235 5' -65.9 AC_000008.1 + 20699 0.67 0.133368
Target:  5'- gGCCucaGCGCGCuucuCCuCAGCCCGUguGGCa- -3'
miRNA:   3'- aCGG---CGCGUGu---GG-GUCGGGCG--CCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.