Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
235 | 5' | -65.9 | AC_000008.1 | + | 29540 | 0.66 | 0.152565 |
Target: 5'- cGuuGCGCGCGaauacgUgCAGCUaaacauCGCGGCCAa -3' miRNA: 3'- aCggCGCGUGU------GgGUCGG------GCGCCGGU- -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 29483 | 0.66 | 0.165256 |
Target: 5'- uUGgCGCGUGCACCUgguGCCCGaCGaGCgCAc -3' miRNA: 3'- -ACgGCGCGUGUGGGu--CGGGC-GC-CG-GU- -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 29304 | 0.66 | 0.156694 |
Target: 5'- -uUCGaCGCGCGCCUgcuGCCCGgGGUCu -3' miRNA: 3'- acGGC-GCGUGUGGGu--CGGGCgCCGGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 28058 | 0.66 | 0.169692 |
Target: 5'- cUGCCGCGCGagACCUAGCC-GCGaaCCu -3' miRNA: 3'- -ACGGCGCGUg-UGGGUCGGgCGCc-GGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 27366 | 0.67 | 0.129806 |
Target: 5'- cGCCGCGCgguaccguagucGCGCCgCGGggaUGCGGCCu -3' miRNA: 3'- aCGGCGCG------------UGUGG-GUCgg-GCGCCGGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 26816 | 0.66 | 0.169244 |
Target: 5'- cGCUGCGUcugGCGCCCAacgaacccguaucGaCCCGCGaGCUu -3' miRNA: 3'- aCGGCGCG---UGUGGGU-------------C-GGGCGC-CGGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 26143 | 0.66 | 0.169692 |
Target: 5'- cGCCGCcCGCugCC-GCCCGCcacGGUg- -3' miRNA: 3'- aCGGCGcGUGugGGuCGGGCG---CCGgu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 25073 | 0.66 | 0.165256 |
Target: 5'- cGCUGCGCGCGgCCAGU----GGCCAa -3' miRNA: 3'- aCGGCGCGUGUgGGUCGggcgCCGGU- -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 24582 | 0.66 | 0.160923 |
Target: 5'- cUGCCGUGCcaACCgCAGCCgaGCGGaCAa -3' miRNA: 3'- -ACGGCGCGugUGG-GUCGGg-CGCCgGU- -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 23945 | 0.68 | 0.107236 |
Target: 5'- cGUCGCGCGCACCgC-GUCCGCGcUCGg -3' miRNA: 3'- aCGGCGCGUGUGG-GuCGGGCGCcGGU- -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 23848 | 0.68 | 0.110219 |
Target: 5'- aGCuCGCGguCGCUgAGCUCGCGccGCCGg -3' miRNA: 3'- aCG-GCGCguGUGGgUCGGGCGC--CGGU- -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 23683 | 0.71 | 0.065001 |
Target: 5'- uUGCCaGCGCGCGCgggugccaccgCCAGCCCaggucCGGCCc -3' miRNA: 3'- -ACGG-CGCGUGUG-----------GGUCGGGc----GCCGGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 23200 | 0.72 | 0.056459 |
Target: 5'- cUGCUGCGCGCGCUCAcgcuGCgCCaCGGCCu -3' miRNA: 3'- -ACGGCGCGUGUGGGU----CG-GGcGCCGGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 23187 | 0.66 | 0.156276 |
Target: 5'- aGCgGUGCagccacaACGCgCAGCCCGUGGgCu -3' miRNA: 3'- aCGgCGCG-------UGUGgGUCGGGCGCCgGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 22725 | 0.68 | 0.116419 |
Target: 5'- cUGcCCGUGUccuccuGC-CCCAGCgCGCGGCUg -3' miRNA: 3'- -AC-GGCGCG------UGuGGGUCGgGCGCCGGu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 21640 | 0.68 | 0.11328 |
Target: 5'- -cCUGCGCACGCCCuucucGGCCgGCaacGCCAc -3' miRNA: 3'- acGGCGCGUGUGGG-----UCGGgCGc--CGGU- -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 21595 | 0.67 | 0.144602 |
Target: 5'- gGuCCGUGUGCACCgGccGCaCCGCGGCg- -3' miRNA: 3'- aC-GGCGCGUGUGGgU--CG-GGCGCCGgu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 20699 | 0.67 | 0.133368 |
Target: 5'- gGCCucaGCGCGCuucuCCuCAGCCCGUguGGCa- -3' miRNA: 3'- aCGG---CGCGUGu---GG-GUCGGGCG--CCGgu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 19892 | 0.7 | 0.076903 |
Target: 5'- gGCCGCGUuugugcGCGCCCcagGGCgCGCGGUa- -3' miRNA: 3'- aCGGCGCG------UGUGGG---UCGgGCGCCGgu -5' |
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235 | 5' | -65.9 | AC_000008.1 | + | 19762 | 0.69 | 0.098736 |
Target: 5'- cGCCGggcucCGCGCACCaCGGUCUGaauGGCCGc -3' miRNA: 3'- aCGGC-----GCGUGUGG-GUCGGGCg--CCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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